ViewGene
Locus Name:
GeneID:
Location:

GeneID:2354
TrivialName: PA14_61590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61590
PAO1 Ortholog Locus:PA4656
Sequence Length:918
Protein Length:305
Start: 5496416
Stop: 5495499
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08043.1|AE004879_9 (AE004879) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 302/305 (99%), Positives = 303/305 (99%)
Sequence:
ATGCACATTCTCTTGACCGGCGGTACCGGCCTGATGGGTCGCCGCCTGTGCGCCCGCTGGCGACAGGCCGGA
CACCGGCTGACCGTGTTCAGCCGGCGGCCGCAGCAGGTGGAATCGCTGTGCGGCGTCGGCGTGCGCGGCATC
GATCGTTTCGACGAGTACGGCGACCAGCCGCTCGACGCGGTGGTCAACCTGGCCGGCGAGCCGATCGCGGAC
AAACCCTGGAGCCACAAGCGCAAGGCGCTGCTGTGGGAAAGCCGGGTACGCCTTACCGAGCGCCTGATGGAA
TGGCTGGACGCTCGTGAGCAGCGCCCGGACCTTCTGTTATCGGGTTCTGCGGTGGGTTGGTATGGCGACAGC
GGCGAGCGCCCGGTGACCGAGGAGGGGGCGGCGGCCGGCGAGGATTTCGCTAGCGAGCTATGCCTAGCCTGG
GAGCAGATCGCCCGCGAGGCGGAGAAGCTCGGCACCCGTGTCGTGCTGTTGCGCACCGGCCTGGTGCTGGCC
CCCGAGGGCGGCTTCCTCGGGCGCCTGTTGCCGCTCTACCGGCTCGGCCTGGGCGGACCGCTGGGTGACGGC
CGGCAATGGATGCCGTGGATTCATATCGAGGATCAAATCGAGCTGATCGATTTTCTTTTGCGGCGGCCCGAT
GCCAGCGGTCCCTATAATGCGTGCGCTCCCAACCCGGTGCGCAACCGCGATTTCGCCAAGGCCCTGGGCCGG
GCGCTGCACAAGCCGGCGCGGATACCGACCCCCGGGTTCGTACTGCGCCTCGGGCTGGGAGAAATGTCCGGA
TTGCTGCTCGGTGGCCAGCGAGCCTTGCCGCAGCGCTTGCAGGATGCCGGCTACCGTTTTCAATTCACCGAC
CTGGACGCGGCGCTGGCCGATGTCCTGGCCGCCCGACGAAAGGATCAGGCATGA
Translation:
MHILLTGGTGLMGRRLCARWRQAGHRLTVFSRRPQQVESLCGVGVRGIDRFDEYGDQPLDAVVNLAGEPIAD
KPWSHKRKALLWESRVRLTERLMEWLDAREQRPDLLLSGSAVGWYGDSGERPVTEEGAAAGEDFASELCLAW
EQIAREAEKLGTRVVLLRTGLVLAPEGGFLGRLLPLYRLGLGGPLGDGRQWMPWIHIEDQIELIDFLLRRPD
ASGPYNACAPNPVRNRDFAKALGRALHKPARIPTPGFVLRLGLGEMSGLLLGGQRALPQRLQDAGYRFQFTD
LDAALADVLAARRKDQA*
AnnotationID:2362GeneID:2354
AnnotatorUID: diggins
Modification Date/Time: 2005-05-08 18:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative sugar nucleotide epimerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1090
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP17711.1| (AE016986) putative sugar nucleotide epimerase [Shigella flexneri
           2a str. 2457T]
          Length = 297

 Score =  294 bits (752), Expect = 5e-79
 Identities = 154/300 (51%), Positives = 213/300 (71%), Gaps = 7/300 (2%)

>gb|AAG57433.1|AE005462_8 (AE005462) putative sugar nucleotide epimerase [Escherichia coli
           O157:H7 EDL933]
          Length = 297

 Score =  292 bits (747), Expect = 2e-78
 Identities = 151/300 (50%), Positives = 213/300 (71%), Gaps = 7/300 (2%)








 
Structural Features:
COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase
CD-Length = 297 residues, 100.0% aligned
Score =  418 bits (1076), Expect = 4e-118
Identities = 163/298 (54%), Positives = 220/298 (73%), Gaps = 1/298 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21857




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37591




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2354_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2354
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3996
                           PA4656_tr
                           translation of PA4656
                           305
                           99.01
                           99.34
                           0
                           1592.0
     

     
     
120728
                           gb|AAG08043.1|AE004879_9
                           (AE004879) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           305
                           99.01
                           99.34
                           0
                           1592.0
     

     
     
120729
                           gb|AAN66368.1|AE016265_2
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           306
                           63.72
                           78.10
                           6
                           1044.0
     

     
     
120730
                           gb|AAO54656.1|
                           (AE016859) conserved hypothetical protein TIGR01777 [Pseudomonas syringae pv. tomato str. DC3000]
                           305
                           62.29
                           75.08
                           5
                           1036.0
     

     
     
120731
                           gb|AAP17711.1|
                           (AE016986) putative sugar nucleotide epimerase [Shigella flexneri 2a str. 2457T]
                           308
                           50.00
                           69.15
                           14
                           760.0
     

     






      

          
GC ORFID: 45356How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4656Glimmer Score: 

          
Start: 4760096Stop: 4759179

          
Length: 918


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4656 translation of PA4656Homolog Bit Score 617.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4304 (ORF: BLASTX 399.0), t_PA4656 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACATTCTCTTGACCGGCGGTACCGGCCTGATGGGTCGCCGCCTGTGCGCCCGCTGGCGACAGGCCGGA 
CACCGGCTGACCGTGTTCAGCCGGCGGCCGCAGCAGGTGGAATCGCTGTGCGGCGTCGGCGTGCGCGGCATC 
GATCGTTTCGACGAGTACGGCGACCAGCCGCTCGACGCGGTGGTCAACCTGGCCGGCGAGCCGATCGCGGAC 
AAACCCTGGAGCCACAAGCGCAAGGCGCTGCTGTGGGAAAGCCGGGTACGCCTTACCGAGCGCCTGATGGAA 
TGGCTGGACGCTCGTGAGCAGCGCCCGGACCTTCTGTTATCGGGTTCTGCGGTGGGTTGGTATGGCGACAGC 
GGCGAGCGCCCGGTGACCGAGGAGGGGGCGGCGGCCGGCGAGGATTTCGCTAGCGAGCTATGCCTAGCCTGG 
GAGCAGATCGCCCGCGAGGCGGAGAAGCTCGGCACCCGTGTCGTGCTGTTGCGCACCGGCCTGGTGCTGGCC 
CCCGAGGGCGGCTTCCTCGGGCGCCTGTTGCCGCTCTACCGGCTCGGCCTGGGCGGACCGCTGGGTGACGGC 
CGGCAATGGATGCCGTGGATTCATATCGAGGATCAAATCGAGCTGATCGATTTTCTTTTGCGGCGGCCCGAT 
GCCAGCGGTCCCTATAATGCGTGCGCTCCCAACCCGGTGCGCAACCGCGATTTCGCCAAGGCCCTGGGCCGG 
GCGCTGCACAAGCCGGCGCGGATACCGACCCCCGGGTTCGTACTGCGCCTCGGGCTGGGAGAAATGTCCGGA 
TTGCTGCTCGGTGGCCAGCGAGCCTTGCCGCAGCGCTTGCAGGATGCCGGCTACCGTTTTCAATTCACCGAC 
CTGGACGCGGCGCTGGCCGATGTCCTGGCCGCCCGACGAAAGGATCAGGCATGA