ViewGene

Locus Name:
GeneID:
Location:

GeneID:2352
TrivialName: PA14_57630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57630
PAO1 Ortholog Locus:PA4436
Sequence Length:900
Protein Length:299
Start: 5132303
Stop: 5133202
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07824.1|AE004858_2 (AE004858) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 299/299 (100%), Positives = 299/299 (100%)
Sequence:
ATGGCCAGCCTGCGCCACGGCAAGCAGCAGGGCCTCGGTCTCCAGCCGGCCTTCCGCACCCGCATCCTCAGC
CCCGACGGCCAGCCGGTACGCAGCTTCAGCGGCGACAGCATCGCCGTCGACGGTCCCCTCGCCGCCTGCGAT
ATAGTGGTCCTGCCCGCCTTCTGGGGCGACTTCGACGCGCTCGAACGGCGCTATCCGCAAATCGTTCCCTGG
TTGCGCCGCAGCCATGCCGAGGGAACCGCCCTCTGCGGCGAGGCGACCGGGGTCTTCTGGCTGGCCCAGGCA
GGCCTGCTGGATGGCAAGGAAGCGACCACCTACTGGCGCTTCTATCGGGAATTCGCCGAACGCTTCCCGAAC
GTGCTCCTCAACCAGGAGAAGCACCTGACCGATGCCGACGACCTGTTCTGCGCCAGCGGCGTCACCTCCGCC
TGCGACCTCTACATCTATCTGATCGAGCGTTTCTGCGGCGGATCGGTGGCCCAGGCGGTGGCCCGGGATACC
CTCTACGAAGTACAGCGCAGCTACACCCCAGGGCGTATCGGCTTCGGCGGTCAGAAGCTGCACCATGACCCG
ACGATCCTGCAGATCCAGCAATGGCTGGAAGACCACTTCGCCGACAAGTTCCGTTTCGAGGACGTCGCCCGC
GACCACGGCATGAGCATCCGCAACTTCATGCGGCGCTTCCAGGCCGCTACCGGCGACAAGCCGCTGCACTAC
CTGCAGCGACTGCGGATCGAGACCGCCAAGGGCATGCTCTCGAGCACGCGCAAGAGCATCAAGACGATCAGC
TACGAGGTCGGCTACGACGACGCCAGCTTCTTCGCCCGCCTGTTCCGCCAGCACACCGAACTCTCTCCCCAC
CATTACCGTCGCCAGTTCATGCAGAAGGAAAGCTGA
Translation:
MASLRHGKQQGLGLQPAFRTRILSPDGQPVRSFSGDSIAVDGPLAACDIVVLPAFWGDFDALERRYPQIVPW
LRRSHAEGTALCGEATGVFWLAQAGLLDGKEATTYWRFYREFAERFPNVLLNQEKHLTDADDLFCASGVTSA
CDLYIYLIERFCGGSVAQAVARDTLYEVQRSYTPGRIGFGGQKLHHDPTILQIQQWLEDHFADKFRFEDVAR
DHGMSIRNFMRRFQAATGDKPLHYLQRLRIETAKGMLSSTRKSIKTISYEVGYDDASFFARLFRQHTELSPH
HYRRQFMQKES*
AnnotationID:2360GeneID:2352
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA4436
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4977,COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4977, Transcriptional regulator containing an amidase domain 
and an AraC-type DNA-binding HTH domain [Transcription]
CD-Length = 328 residues,  86.3% aligned
Score =  280 bits (719), Expect = 2e-76
Identities = 110/284 (38%), Positives = 152/284 (53%), Gaps = 3/284 (1%)

COG2207, AraC, AraC-type DNA-binding domain-containing proteins 
[Transcription]
CD-Length = 127 residues,  88.2% aligned
Score = 91.9 bits (227), Expect = 2e-19
Identities = 37/112 (33%), Positives = 62/112 (55%)
Genomic Context:
Comment:
ReferenceID:4707
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21853
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31476
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2352_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2352

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3993 PA4436_tr translation of PA4436 299 99.99 99.99 0 1591.0
120705 gb|AAG07824.1|AE004858_2 (AE004858) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 299 99.99 99.99 0 1591.0
120707 gb|AAN66937.1|AE016322_4 (AE016778) transcriptional regulator, AraC family [Pseudomonas putida KT2440] 307 73.94 84.36 9 1249.0
120706 gb|AAO57876.1| (AE016871) transcriptional regulator, AraC family [Pseudomonas syringae pv. tomato str. DC3000] 339 68.73 76.40 43 1254.0
GC ORFID: 45354How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4436Glimmer Score:
Start: 4395982Stop: 4396881
Length: 900
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4436 translation of PA4436Homolog Bit Score 617.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2013 (ORF: BLASTX 518.0), t_PA4436 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAGCCTGCGCCACGGCAAGCAGCAGGGCCTCGGTCTCCAGCCGGCCTTCCGCACCCGCATCCTCAGC
CCCGACGGCCAGCCGGTACGCAGCTTCAGCGGCGACAGCATCGCCGTCGACGGTCCCCTCGCCGCCTGCGAT
ATAGTGGTCCTGCCCGCCTTCTGGGGCGACTTCGACGCGCTCGAACGGCGCTATCCGCAAATCGTTCCCTGG
TTGCGCCGCAGCCATGCCGAGGGAACCGCCCTCTGCGGCGAGGCGACCGGGGTCTTCTGGCTGGCCCAGGCA
GGCCTGCTGGATGGCAAGGAAGCGACCACCTACTGGCGCTTCTATCGGGAATTCGCCGAACGCTTCCCGAAC
GTGCTCCTCAACCAGGAGAAGCACCTGACCGATGCCGACGACCTGTTCTGCGCCAGCGGCGTCACCTCCGCC
TGCGACCTCTACATCTATCTGATCGAGCGTTTCTGCGGCGGATCGGTGGCCCAGGCGGTGGCCCGGGATACC
CTCTACGAAGTACAGCGCAGCTACACCCCAGGGCGTATCGGCTTCGGCGGTCAGAAGCTGCACCATGACCCG
ACGATCCTGCAGATCCAGCAATGGCTGGAAGACCACTTCGCCGACAAGTTCCGTTTCGAGGACGTCGCCCGC
GACCACGGCATGAGCATCCGCAACTTCATGCGGCGCTTCCAGGCCGCTACCGGCGACAAGCCGCTGCACTAC
CTGCAGCGACTGCGGATCGAGACCGCCAAGGGCATGCTCTCGAGCACGCGCAAGAGCATCAAGACGATCAGC
TACGAGGTCGGCTACGACGACGCCAGCTTCTTCGCCCGCCTGTTCCGCCAGCACACCGAACTCTCTCCCCAC
CATTACCGTCGCCAGTTCATGCAGAAGGAAAGCTGA