ViewGene
Locus Name:
GeneID:
Location:

GeneID:2351
TrivialName: PA14_21890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21890
PAO1 Ortholog Locus:PA3256
Sequence Length:963
Protein Length:320
Start: 1904389
Stop: 1905351
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06644.1|AE004748_2 (AE004748) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 315/320 (98%), Positives = 315/320 (98%)
Sequence:
GTGAACGCATTGCAAGGTATCGAAGGTCGTGTCGAGTGGTCGGAAATCGCCGCCCCGTCCTGCGGTCAGGGC
GAAATCCGCATCCGCGTGGCGGCCGCCGGACTCAACCGCGCCGACCTGTTGCAGAAGGCCGGGCTCTACCCG
CCGCCACCCGGCGCCAGCCCGGCGCTGGGGCTCGAGTGTGCGGGTGTGGTCAGCGAGGTGGGCGCGGGCAGC
ACCTGGCAGGTCGGCGACCGGGTCTGCGCGCTGCTCGCCGGCGGCGGCATGGCCGAGGAAGTGGTGGTGGAC
GCGCGCCACGTACTGCCGGTCCCGGCAGGGCTGAGCCTGGCGGAGGCGGCGGGGATTCCGGAGGTCTACGCC
ACGGCCTGGCTGAACCTGTTCCAACTGGCGGCGTTGCAGCCCGGCGAGAAAGTGCTGCTGCACGCCGGCGCC
AGCGGCGTCGGTTCGGCCGGCATCCAACTGTGCAAGGCGTTCGGCAACCCCTGCTGGGTCAGCGTCGGTTCT
GCCGAACGCCTGGCCTACTGCGAATCCCTGGGCGCCGCCGGTGGCGCGCTGCGCAAGCAGAGCCTGGAATCG
CTGCGCGATTTCGCCCCGTTCGACGTGATCCTCGACCCGGTCGGTGCCCGCTATGCCGGGTTGAACCTGGAG
CTGCTGCGGAGCGACGGGCGCTGGGTGATCATCGGCCTGATGGGCGGCCGCGAGGCGCAACTGGACCTGGCA
CAACTGCTAGGCAAGCGTATCCAGTTGACCGGCTCGACCCTGCGTACCCGCGATACCGAGTTCAAGGCGCAA
CTGATTGCCGAGCTGGGGTTGAAGGTCTGGCCATTGTTCTCCGCCGGGAAACTCCGTGCGCAGCTGGAGCGA
ACCTTCCCGATCGGCGACGCCGAGGCGGCGTTCGAGGCGCTGGCGAGCAACCAGGTGCAGGGCAAGGTCGTG
CTGGTGGTGGACCCATCGCTGGCCTGA
Translation:
MNALQGIEGRVEWSEIAAPSCGQGEIRIRVAAAGLNRADLLQKAGLYPPPPGASPALGLECAGVVSEVGAGS
TWQVGDRVCALLAGGGMAEEVVVDARHVLPVPAGLSLAEAAGIPEVYATAWLNLFQLAALQPGEKVLLHAGA
SGVGSAGIQLCKAFGNPCWVSVGSAERLAYCESLGAAGGALRKQSLESLRDFAPFDVILDPVGARYAGLNLE
LLRSDGRWVIIGLMGGREAQLDLAQLLGKRIQLTGSTLRTRDTEFKAQLIAELGLKVWPLFSAGKLRAQLER
TFPIGDAEAAFEALASNQVQGKVVLVVDPSLA*
AnnotationID:2359GeneID:2351
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:02
Gene Name:
Confidence Code:3
GeneProduct:putative quinone oxidoreductase
Cell Localization:()
Synonyms:qor
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative zinc-binding dehydrogenase
Functional Category Confidence Code:5
COGs:pfam00107,COG0604,COG1064
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57350.1| (AE016870) oxidoreductase, zinc-binding [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 320

 Score =  476 bits (1226), Expect = e-134
 Identities = 233/319 (73%), Positives = 271/319 (84%)

>gb|AAN67341.1|AE016360_7 (AE016780) alcohol dehydrogenase, zinc-containing [Pseudomonas
           putida KT2440]
          Length = 320

 Score =  464 bits (1194), Expect = e-130
 Identities = 224/319 (70%), Positives = 267/319 (83%)

>dbj|BAC72080.1| (AP005038) putative quinone oxidoreductase [Streptomyces
           avermitilis MA-4680]
          Length = 326

 Score =  266 bits (681), Expect = 9e-71
 Identities = 142/309 (45%), Positives = 198/309 (64%), Gaps = 6/309 (1%)








 
Structural Features:
pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues,  99.4% aligned
Score =  158 bits (400), Expect = 9e-40
Identities = 117/349 (33%), Positives = 157/349 (44%), Gaps = 49/349 (14%)

COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues,  95.7% aligned
Score =  221 bits (563), Expect = 1e-58
Identities = 133/316 (42%), Positives = 174/316 (55%), Gaps = 15/316 (4%)

COG1064, AdhP, Zn-dependent alcohol dehydrogenases
CD-Length = 339 residues,  97.6% aligned
Score =  151 bits (382), Expect = 1e-37
Identities = 104/345 (30%), Positives = 150/345 (43%), Gaps = 45/345 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21851




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32287




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2351_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2351
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3991
                           PA3256_tr
                           translation of PA3256
                           320
                           98.43
                           98.43
                           0
                           1592.0
     

     
     
120670
                           gb|AAG06644.1|AE004748_2
                           (AE004748) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           320
                           98.12
                           98.43
                           0
                           1589.0
     

     
     
120671
                           gb|AAO57350.1|
                           (AE016870) oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           320
                           72.50
                           84.68
                           0
                           1222.0
     

     
     
120672
                           gb|AAN67341.1|AE016360_7
                           (AE016780) alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
                           320
                           69.68
                           83.43
                           0
                           1190.0
     

     
     
120673
                           dbj|BAC72080.1|
                           (AP005038) putative quinone oxidoreductase [Streptomyces avermitilis MA-4680]
                           333
                           44.44
                           61.56
                           20
                           684.0
     

     






      

          
GC ORFID: 45353How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3256Glimmer Score: 

          
Start: 3049542Stop: 3048580

          
Length: 963


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3256 translation of PA3256Homolog Bit Score 617.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2633 (ORF: BLASTX 471.0), t_PA1137 (ORF: BLASTX 207.0), t_PA3256 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACGCATTGCAAGGTATCGAAGGTCGTGTCGAGTGGTCGGAAATCGCCGCCCCGTCCTGCGGTCAGGGC 
GAAATCCGCATCCGCGTGGCGGCCGCCGGACTCAACCGCGCCGACCTGTTGCAGAAGGCCGGGCTCTACCCG 
CCGCCACCCGGCGCCAGCCCGGCGCTGGGGCTCGAGTGTGCGGGTGTGGTCAGCGAGGTGGGCGCGGGCAGC 
ACCTGGCAGGTCGGCGACCGGGTCTGCGCGCTGCTCGCCGGCGGCGGCATGGCCGAGGAAGTGGTGGTGGAC 
GCGCGCCACGTACTGCCGGTCCCGGCAGGGCTGAGCCTGGCGGAGGCGGCGGGGATTCCGGAGGTCTACGCC 
ACGGCCTGGCTGAACCTGTTCCAACTGGCGGCGTTGCAGCCCGGCGAGAAAGTGCTGCTGCACGCCGGCGCC 
AGCGGCGTCGGTTCGGCCGGCATCCAACTGTGCAAGGCGTTCGGCAACCCCTGCTGGGTCAGCGTCGGTTCT 
GCCGAACGCCTGGCCTACTGCGAATCCCTGGGCGCCGCCGGTGGCGCGCTGCGCAAGCAGAGCCTGGAATCG 
CTGCGCGATTTCGCCCCGTTCGACGTGATCCTCGACCCGGTCGGTGCCCGCTATGCCGGGTTGAACCTGGAG 
CTGCTGCGGAGCGACGGGCGCTGGGTGATCATCGGCCTGATGGGCGGCCGCGAGGCGCAACTGGACCTGGCA 
CAACTGCTAGGCAAGCGTATCCAGTTGACCGGCTCGACCCTGCGTACCCGCGATACCGAGTTCAAGGCGCAA 
CTGATTGCCGAGCTGGGGTTGAAGGTCTGGCCATTGTTCTCCGCCGGGAAACTCCGTGCGCAGCTGGAGCGA 
ACCTTCCCGATCGGCGACGCCGAGGCGGCGTTCGAGGCGCTGGCGAGCAACCAGGTGCAGGGCAAGGTCGTG 
CTGGTGGTGGACCCATCGCTGGCCTGA