ViewGene

Locus Name:
GeneID:
Location:

GeneID:2350
TrivialName: PA14_24420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24420
PAO1 Ortholog Locus:PA3071
Sequence Length:939
Protein Length:312
Start: 2127669
Stop: 2126731
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06459.1|AE004731_7 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 311/312 (99%), Positives = 312/312 (100%)
Sequence:
ATGCTGAGCGCCGCCCCGGGCGTCGAACTGGGCCTCGACGAGCTTCTGGAAATGCGCCACCGGCTCCACGAA
GCGCGCCTGTTCTCCTCGCAGAACCGCCGCAGCCCGCTGGTCGGCCTGCATCACTCGCGCCTGCGCGGACGC
GGCGTGGACTTCGACCAGGTGCGCATCTACCAGCCCGGCGACGACGTACGGACCATCGACTGGCGCGTCACC
GCGCGCACCCGCGAGCCGCACACCAAGCTGTTCCACGAGGAACGCGAGCGACCGGTGTTCGTCCTGGTCGAA
CAGAGCCAGCGCCTGTTCTTCGGCTCCGGCCTGTGCTTCAAGGCGGTGCTGGCGGCACGCGCGGCGGCCTTC
ATCGGCTGGTCGGCGCTGGCCCACAACGACCGTATCGGCGGCCTGGTATTCAGCGACCGCGACTGCCACGAA
ATCAAGCCGCGACGCAGCAAGCACAGCCTGCTACAACTGTTCAACCAGCTATTGCGGGCCAATCGCGAGCTG
CGCGAGACGCCGGCCGAGCGACCTGGCGAACTGTTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGC
CCGGGCAGCCTGATCCTGGTGCTGTGCGACGAGCGCACCCTCAATGACGTCGCCGAGCAGCAACTCAGCCTG
ATCGCACGCCATACCGACCTGGTGCTGCTACCGCTGTCCGACCCGCTCGACCATGCCCTCCCCGCCGCCGGA
CTGCTGCGCTTCCGCGAAGGCGCCGCCGACCTCGAGCTGGACACCCACGCCAACGAGCTGCGCCAGGCCTAT
CGCGAGCTGGCCGAGGCGCGCCGCGCGCGCTGGCAGCGGCTGGCCCAGCGACTGGGCGTGCCGCTGCTGCCG
CTGTCGACCCAGGAAGACCTGGTGGAGCAGTTGCGGGACCTGCTGGAACAACACCAGCCGGGATATCGCGCA
TGA
Translation:
MLSAAPGVELGLDELLEMRHRLHEARLFSSQNRRSPLVGLHHSRLRGRGVDFDQVRIYQPGDDVRTIDWRVT
ARTREPHTKLFHEERERPVFVLVEQSQRLFFGSGLCFKAVLAARAAAFIGWSALAHNDRIGGLVFSDRDCHE
IKPRRSKHSLLQLFNQLLRANRELRETPAERPGELFGLALRRAREVLRPGSLILVLCDERTLNDVAEQQLSL
IARHTDLVLLPLSDPLDHALPAAGLLRFREGAADLELDTHANELRQAYRELAEARRARWQRLAQRLGVPLLP
LSTQEDLVEQLRDLLEQHQPGYRA*
AnnotationID:2358GeneID:2350
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 13:01:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3071
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4703
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21849
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32441
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2350_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2350

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3990 PA3071_tr translation of PA3071 312 99.67 99.99 0 1591.0
120667 gb|AAG06459.1|AE004731_7 (AE004731) hypothetical protein PA3071 [Pseudomonas aeruginosa PAO1] 312 99.67 99.99 0 1591.0
120668 gb|AAO57229.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 316 69.62 82.59 6 1125.0
120669 gb|AAN67645.1|AE016394_6 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 319 65.20 78.36 8 1065.0
GC ORFID: 45352How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3071Glimmer Score:
Start: 2826261Stop: 2827199
Length: 939
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3071 translation of PA3071Homolog Bit Score 617.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene664 (ORF: BLASTX 431.0), t_PA3071 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGAGCGCCGCCCCGGGCGTCGAACTGGGCCTCGACGAGCTTCTGGAAATGCGCCACCGGCTCCACGAA
GCGCGCCTGTTCTCCTCGCAGAACCGCCGCAGCCCGCTGGTCGGCCTGCATCACTCGCGCCTGCGCGGACGC
GGCGTGGACTTCGACCAGGTGCGCATCTACCAGCCCGGCGACGACGTACGGACCATCGACTGGCGCGTCACC
GCGCGCACCCGCGAGCCGCACACCAAGCTGTTCCACGAGGAACGCGAGCGACCGGTGTTCGTCCTGGTCGAA
CAGAGCCAGCGCCTGTTCTTCGGCTCCGGCCTGTGCTTCAAGGCGGTGCTGGCGGCACGCGCGGCGGCCTTC
ATCGGCTGGTCGGCGCTGGCCCACAACGACCGTATCGGCGGCCTGGTATTCAGCGACCGCGACTGCCACGAA
ATCAAGCCGCGACGCAGCAAGCACAGCCTGCTACAACTGTTCAACCAGCTATTGCGGGCCAATCGCGAGCTG
CGCGAGACGCCGGCCGAGCGACCTGGCGAACTGTTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGC
CCGGGCAGCCTGATCCTGGTGCTGTGCGACGAGCGCACCCTCAATGACGTCGCCGAGCAGCAACTCAGCCTG
ATCGCACGCCATACCGACCTGGTGCTGCTACCGCTGTCCGACCCGCTCGACCATGCCCTCCCCGCCGCCGGA
CTGCTGCGCTTCCGCGAAGGCGCCGCCGACCTCGAGCTGGACACCCACGCCAACGAGCTGCGCCAGGCCTAT
CGCGAGCTGGCCGAGGCGCGCCGCGCGCGCTGGCAGCGGCTGGCCCAGCGACTGGGCGTGCCGCTGCTGCCG
CTGTCGACCCAGGAAGACCTGGTGGAGCAGTTGCGGGACCTGCTGGAACAACACCAGCCGGGATATCGCGCA
TGA