ViewGene
Locus Name:
GeneID:
Location:

GeneID:235
TrivialName: PA14_43790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43790
PAO1 Ortholog Locus:PA1601
Sequence Length:2247
Protein Length:748
Start: 3897972
Stop: 3900218
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04990.1|AE004588_3 (AE004588) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 744/748 (99%), Positives = 745/748 (99%)
Sequence:
ATGAGCCTGGCCAATCCCTCGCGACGCGGCTTCCTCAAGGCCGGCGGCCTGCTGCTGGTCACCGTCAACCTG
CCCGCCCCGCTACTCGCCCTCGCCGAGCAGGGCGCCACCGACCTGCCGCTGGACCAGGTCGACTCGTTCATC
GCCATCGCCGCGGACGGCAAGGTCACCGCCTTCTGCGGTCACGTCGACCTTGGTACCGGCATCCGCACGGCA
CTGGCGCAGATCGTCGCCGAAGAGTTGGACGTCGCGTTCGAGCAGGTCGAGATGATCCTCGGCGACACCCGT
CGCACACCGGACCAGGGGCCGACCATCGCCAGCGCCAGCATCCAGGTCAGCGCCGTGCCGCTGCGCCAGGCC
GCCGCCGAAGCCCGGCGCTTCCTCCTGCGTCAGGCCGGAAGCCATTTCCCGGTGCATCCGGACAGCCTGCGC
AGCGAAAACGGCCAGGTCTTCGCCGCCGCCAATCCGCAGCGACGGATCGGCTACGGCGAGTTGCTGCGAGGC
CAGCGCTTCAACCTGAACATCGACGGCAAGGCGCCGCTCAAGCCGCGCAGCGAGTACCGTCTGGTCGGCAAG
CCGGTGCGTCGGGTGGACATCCCGGCGAAGCTGACCGGTCAACTGACCTATGTCCACGACATGCGCTTGCCC
GGCATGCTGCATGGGCGAGTGGTACGCCCGCCCTATACCGGCGCGGATGTCAGCGCCCCGCTCGGCAGCGGC
CTGCTGGCGGTGGACGAAAGCTCGGTCGCCGGGCTGCCGGGGCTGGTCAAGGTGGTCGTGATCGGCGACTTC
GTCGGCGTGGTCTGCGAACGCGAGGAGCAGGCGATCCGCGCCGCGCGCCAGCTCAAGGTGCGCTGGAAGGAC
TGGCAGGGCCTGCCGCCGCTGGAACCCGACCGGCTCGAGGACACGCTTCGCCGGCATCCGAAGAAGCCACGC
ACGCTGCACGACTCACCCGGTCTCGAGCAGCACCTCGCGGGCATCGCCCGGCCGCTGTCGGCCACCTATGTC
TGGCCCTACCAGTTGCACGCCTCCATCGGCCCTTCCTGCGCCCTCGCCGAGGTCGATGCGCAGCGCGCTCGC
GTCTGGTCCGGCACGCAGAACCCGCACGACCTGCGCAACGACCTGGCCAGGCTGCTGCAGCGCGAGACCGGG
GACATCGAGGTGATCCGCATGGAAGCCGCCGGCTGCTACGGACGCAACGGCGCCGACGACGTCAGCGCCGAC
GCCGTGCTCCTGGCGCAGACGGTGGGCCGGCCGGTGCGGGTACAACTGATGCGCGAACAGGAACATGGCTGG
GAACCGAAAGGCACCGCGCAACTGATCGAGGTCCGCGGCGGTCTCGACGAGCAAGGCCGGGTGGCGGCCTAC
GACTTCGCCACCTGCTACCCCTCCAACGGTGCGCCGACCCTGGCCCTGCTCCTCACCAGGCGGATCCCGGCC
ACCCCGCAGGTGGCCGACATGGGCGACCGCACCGCGATCCCGCAATACCGCTACCCGCGGATGCGGGTGGTG
GCCAACGACGCCGTCCCCATCGTCCGCGCGTCCTGGATGCGCGGCGTCTCGGCGCTGCCGAACGTGTTCGCC
CATGAGTCCTACGCCGACGAACTGGCGCACCTGGCCGGCATCGACCCCATCGCCTTCCGCCGCCGCTACCTG
GACGACCAGCGCGCCCTGGCGCTGATCGACGCCCTGGTCGCCCGCGCCGGCTGGCAGCCACGCACCTCCCCC
AACCCAGAGGCGCGCCGGGACGGCGTGCTGAAGGGACGCGGCTTCGCCTATGCGCGCTACTTCCACAGCAAG
TTTCCCGGTTTCGGCGCCGCCTGGGCCGCCTGGATCGTCGACGTCGAGGTGAACCCGGAGAACGGCGCGGTG
CGCGTCGCCAAGGTCTGGGTCGCCCATGACTGCGGGCAGATGGTCAATCCCGATGGGGTCAGGCACCAGGTC
CACGGCAACGTCATCCAGTCCACCAGCCGGGTACTCAAGGAGTTCGCCACCTTCGACCGCCGCGGCGTCACC
AGCCTGGAATGGGGCGGCTACCCGATCCTCGGCTTCCCCGAACTGCCGGAGATCGACGTGCTGCTGCTCGAC
CGCCCCGAGCAGCCACCGATGGGCGCTGGCGAGTCAGCCTCGGTGCCCAGCGCCGCGGCCATCGCCAATGCG
ATCTTCGACGCTACCGGAGCGCGCCTGCGACAGGTGCCGTTCACTCCGGAACGCGTACTCGCGGCGCTGCGC
AGCGCGCAGGCCTGA
Translation:
MSLANPSRRGFLKAGGLLLVTVNLPAPLLALAEQGATDLPLDQVDSFIAIAADGKVTAFCGHVDLGTGIRTA
LAQIVAEELDVAFEQVEMILGDTRRTPDQGPTIASASIQVSAVPLRQAAAEARRFLLRQAGSHFPVHPDSLR
SENGQVFAAANPQRRIGYGELLRGQRFNLNIDGKAPLKPRSEYRLVGKPVRRVDIPAKLTGQLTYVHDMRLP
GMLHGRVVRPPYTGADVSAPLGSGLLAVDESSVAGLPGLVKVVVIGDFVGVVCEREEQAIRAARQLKVRWKD
WQGLPPLEPDRLEDTLRRHPKKPRTLHDSPGLEQHLAGIARPLSATYVWPYQLHASIGPSCALAEVDAQRAR
VWSGTQNPHDLRNDLARLLQRETGDIEVIRMEAAGCYGRNGADDVSADAVLLAQTVGRPVRVQLMREQEHGW
EPKGTAQLIEVRGGLDEQGRVAAYDFATCYPSNGAPTLALLLTRRIPATPQVADMGDRTAIPQYRYPRMRVV
ANDAVPIVRASWMRGVSALPNVFAHESYADELAHLAGIDPIAFRRRYLDDQRALALIDALVARAGWQPRTSP
NPEARRDGVLKGRGFAYARYFHSKFPGFGAAWAAWIVDVEVNPENGAVRVAKVWVAHDCGQMVNPDGVRHQV
HGNVIQSTSRVLKEFATFDRRGVTSLEWGGYPILGFPELPEIDVLLLDRPEQPPMGAGESASVPSAAAIANA
IFDATGARLRQVPFTPERVLAALRSAQA*
AnnotationID:245GeneID:235
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:PA1601
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1529
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69542.1|AE016587_8 (AE016788) aldehyde dehydrogenase family protein,
           putative/cytochrome c family protein, putative
           [Pseudomonas putida KT2440]
          Length = 1187

 Score =  870 bits (2247), Expect = 0.0
 Identities = 450/738 (60%), Positives = 539/738 (73%), Gaps = 3/738 (0%)

>emb|CAE32280.1| (BX640442) probable aldehyde dehydrogenase [Bordetella
           bronchiseptica]
          Length = 774

 Score =  832 bits (2150), Expect = 0.0
 Identities = 449/750 (59%), Positives = 528/750 (70%), Gaps = 16/750 (2%)








 
Structural Features:
COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit 
CoxL/CutL homologs 
[Energy production and conversion]
CD-Length = 731 residues, 100.0% aligned
Score =  338 bits (867), Expect = 2e-93
Identities = 183/761 (24%), Positives = 268/761 (35%), Gaps = 47/761 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:473




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17615




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37228




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:235_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:235
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
400
                           PA1601_tr
                           translation of PA1601
                           748
                           99.46
                           99.59
                           0
                           3851.0
     

     
     
22835
                           gb|AAG04990.1|AE004588_3
                           (AE004588) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           748
                           99.46
                           99.59
                           0
                           3851.0
     

     
     
22838
                           emb|CAE32280.1|
                           (BX640442) probable aldehyde dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           794
                           57.05
                           67.00
                           66
                           2173.0
     

     
     
22839
                           emb|CAE37629.1|
                           (BX640430) probable aldehyde dehydrogenase [Bordetella parapertussis]
                           823
                           54.92
                           64.64
                           95
                           2171.0
     

     
     
22840
                           emb|CAC48790.1|
                           (AL603643) putative aldehyde dehydrogenase protein [Sinorhizobium meliloti]
                           788
                           40.35
                           55.96
                           82
                           1326.0
     

     






      

          
GC ORFID: 43237How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1601Glimmer Score: 

          
Start: 1055937Stop: 1053691

          
Length: 2247


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1601 translation of PA1601Homolog Bit Score 1488.0

          
Other Homologs:  t_PA1601 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGGCCAATCCCTCGCGACGCGGCTTCCTCAAGGCCGGCGGCCTGCTGCTGGTCACCGTCAACCTG 
CCCGCCCCGCTACTCGCCCTCGCCGAGCAGGGCGCCACCGACCTGCCGCTGGACCAGGTCGACTCGTTCATC 
GCCATCGCCGCGGACGGCAAGGTCACCGCCTTCTGCGGTCACGTCGACCTTGGTACCGGCATCCGCACGGCA 
CTGGCGCAGATCGTCGCCGAAGAGTTGGACGTCGCGTTCGAGCAGGTCGAGATGATCCTCGGCGACACCCGT 
CGCACACCGGACCAGGGGCCGACCATCGCCAGCGCCAGCATCCAGGTCAGCGCCGTGCCGCTGCGCCAGGCC 
GCCGCCGAAGCCCGGCGCTTCCTCCTGCGTCAGGCCGGAAGCCATTTCCCGGTGCATCCGGACAGCCTGCGC 
AGCGAAAACGGCCAGGTCTTCGCCGCCGCCAATCCGCAGCGACGGATCGGCTACGGCGAGTTGCTGCGAGGC 
CAGCGCTTCAACCTGAACATCGACGGCAAGGCGCCGCTCAAGCCGCGCAGCGAGTACCGTCTGGTCGGCAAG 
CCGGTGCGTCGGGTGGACATCCCGGCGAAGCTGACCGGTCAACTGACCTATGTCCACGACATGCGCTTGCCC 
GGCATGCTGCATGGGCGAGTGGTACGCCCGCCCTATACCGGCGCGGATGTCAGCGCCCCGCTCGGCAGCGGC 
CTGCTGGCGGTGGACGAAAGCTCGGTCGCCGGGCTGCCGGGGCTGGTCAAGGTGGTCGTGATCGGCGACTTC 
GTCGGCGTGGTCTGCGAACGCGAGGAGCAGGCGATCCGCGCCGCGCGCCAGCTCAAGGTGCGCTGGAAGGAC 
TGGCAGGGCCTGCCGCCGCTGGAACCCGACCGGCTCGAGGACACGCTTCGCCGGCATCCGAAGAAGCCACGC 
ACGCTGCACGACTCACCCGGTCTCGAGCAGCACCTCGCGGGCATCGCCCGGCCGCTGTCGGCCACCTATGTC 
TGGCCCTACCAGTTGCACGCCTCCATCGGCCCTTCCTGCGCCCTCGCCGAGGTCGATGCGCAGCGCGCTCGC 
GTCTGGTCCGGCACGCAGAACCCGCACGACCTGCGCAACGACCTGGCCAGGCTGCTGCAGCGCGAGACCGGG 
GACATCGAGGTGATCCGCATGGAAGCCGCCGGCTGCTACGGACGCAACGGCGCCGACGACGTCAGCGCCGAC 
GCCGTGCTCCTGGCGCAGACGGTGGGCCGGCCGGTGCGGGTACAACTGATGCGCGAACAGGAACATGGCTGG 
GAACCGAAAGGCACCGCGCAACTGATCGAGGTCCGCGGCGGTCTCGACGAGCAAGGCCGGGTGGCGGCCTAC 
GACTTCGCCACCTGCTACCCCTCCAACGGTGCGCCGACCCTGGCCCTGCTCCTCACCAGGCGGATCCCGGCC 
ACCCCGCAGGTGGCCGACATGGGCGACCGCACCGCGATCCCGCAATACCGCTACCCGCGGATGCGGGTGGTG 
GCCAACGACGCCGTCCCCATCGTCCGCGCGTCCTGGATGCGCGGCGTCTCGGCGCTGCCGAACGTGTTCGCC 
CATGAGTCCTACGCCGACGAACTGGCGCACCTGGCCGGCATCGACCCCATCGCCTTCCGCCGCCGCTACCTG 
GACGACCAGCGCGCCCTGGCGCTGATCGACGCCCTGGTCGCCCGCGCCGGCTGGCAGCCACGCACCTCCCCC 
AACCCAGAGGCGCGCCGGGACGGCGTGCTGAAGGGACGCGGCTTCGCCTATGCGCGCTACTTCCACAGCAAG 
TTTCCCGGTTTCGGCGCCGCCTGGGCCGCCTGGATCGTCGACGTCGAGGTGAACCCGGAGAACGGCGCGGTG 
CGCGTCGCCAAGGTCTGGGTCGCCCATGACTGCGGGCAGATGGTCAATCCCGATGGGGTCAGGCACCAGGTC 
CACGGCAACGTCATCCAGTCCACCAGCCGGGTACTCAAGGAGTTCGCCACCTTCGACCGCCGCGGCGTCACC 
AGCCTGGAATGGGGCGGCTACCCGATCCTCGGCTTCCCCGAACTGCCGGAGATCGACGTGCTGCTGCTCGAC 
CGCCCCGAGCAGCCACCGATGGGCGCTGGCGAGTCAGCCTCGGTGCCCAGCGCCGCGGCCATCGCCAATGCG 
ATCTTCGACGCTACCGGAGCGCGCCTGCGACAGGTGCCGTTCACTCCGGAACGCGTACTCGCGGCGCTGCGC 
AGCGCGCAGGCCTGA