ViewGene

Locus Name:
GeneID:
Location:

GeneID:2349
TrivialName: PA14_28310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28310
PAO1 Ortholog Locus:PA2767
Sequence Length:969
Protein Length:322
Start: 2447721
Stop: 2446753
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06155.1|AE004704_9 (AE004704) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 319/322 (99%), Positives = 320/322 (99%)
Sequence:
ATGACTCTAGCACCGCGACACCTGCGCATAGAACAACGAGGACGCGTCCTGCAAGTCCTGCTCGACAATCCC
CCGGCGAACTTCCTCACCACGGCGGTGATGCAGGAACTGGCCGACCTGCTGGACGATCTGGAGCAGCGCCAG
GACATCGGTGCCGTCATCCTTTCCGGAGCGGCGGATGGGGTCTTCCTGACCCACTTCGACGTCGACGAGATC
GAGCGCGCCGTCGCCCCCATCACCTTCTCCATGCCGGCCTGGCTGACACGCCTGCTGCTGGAAAGCGAAAGC
CTCCTGCGCCACTTGCCTGGGGCGAGGAAGCTGCTGCGGCGCACCCTGCTGGCAGGCGTCGTCGACATGAAC
CTGTTCCATGAGGTTACCGCGCACATGCGCCGCATGGACAAGGTGTTCATCGCCGCGATCAACGGCCTGGCC
CTGGGCGGCGGCTGCGAGCTGGCGCTGGCCTGCGACCTGCGCCTGATGGCCGAGGACGACCAGGTGGAACGC
TTCCTCGGCCAGCCGGAAGTACTCATCGGCCTGATACCGGGAGGCGGCGGCACCCAGATGCTGGCGCGCAGC
CTGGGCGTAGCCAGGGCCCTGGAGCTGTGCCTGGAAGGGCAACTGCTGGAGCCGCGCCAGGCCCTTGCGCTG
GGCCTGGTCAACGGGCTGGCGCCAGCGGAGGAGCTACTGGAAGCCGCCGACGCGCTGGCGCAACGCCTGTCC
CGGCGCTCGCCGCAGGCGGTGCACCTGATCAAGCGTTCGATCTACCAGGCGGCTTCCCGCGACTGGACGGAG
GGTATGGCCAGCGAAAAGGCCGGCTTCCTCTCCGCCGCCTCCCAAGGCAATACCCGTCGCGCCATGCGCGAA
TACATCGAACGGGTGCGCACCATCACCCGCGAAGAGCGTCCTTTCCGCCGTGCGGATTTCGACGACCTGACC
GAAGGCAACGCCATCGACATGGCCTACAGGTGA
Translation:
MTLAPRHLRIEQRGRVLQVLLDNPPANFLTTAVMQELADLLDDLEQRQDIGAVILSGAADGVFLTHFDVDEI
ERAVAPITFSMPAWLTRLLLESESLLRHLPGARKLLRRTLLAGVVDMNLFHEVTAHMRRMDKVFIAAINGLA
LGGGCELALACDLRLMAEDDQVERFLGQPEVLIGLIPGGGGTQMLARSLGVARALELCLEGQLLEPRQALAL
GLVNGLAPAEELLEAADALAQRLSRRSPQAVHLIKRSIYQAASRDWTEGMASEKAGFLSAASQGNTRRAMRE
YIERVRTITREERPFRRADFDDLTEGNAIDMAYR*
AnnotationID:2357GeneID:2349
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:49
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase
Cell Localization:()
Synonyms:PA2767
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative carnithine racemase
Functional Category Confidence Code:5
COGs:COG1024,pfam00378
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
CD-Length = 257 residues,  98.4% aligned
Score =  147 bits (371), Expect = 2e-36
Identities = 96/289 (33%), Positives = 136/289 (47%), Gaps = 42/289 (14%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family.
CD-Length = 168 residues,  99.4% aligned
Score =  117 bits (294), Expect = 2e-27
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 42/208 (20%)
Genomic Context:
Comment:
ReferenceID:4701
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21847
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36277
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2349_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2349

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3989 PA2767_tr translation of PA2767 322 99.06 99.37 0 1591.0
120661 gb|AAG06155.1|AE004704_9 (AE004704) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1] 322 99.06 99.37 0 1591.0
120663 emb|CAA56274.1| (X79899) enoyl-CoA hydratase [Clostridium difficile] 335 17.61 26.26 193 249.0
120664 gb|AAL21289.1| (AE008807) putative dehydrogenase [Salmonella typhimurium LT2] 752 12.89 19.94 467 257.0
120665 gb|AAO68183.1| (AE016835) putative fatty acid oxidation complex alpha subunit [Salmonella enterica subsp. enterica serovar Typhi Ty2] 752 12.76 19.94 467 257.0
GC ORFID: 45351How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2767Glimmer Score:
Start: 2506205Stop: 2507173
Length: 969
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2767 translation of PA2767Homolog Bit Score 617.0
Other Homologs: t_PA2767 (ORF: GLIMMER)
GC ORF Sequence
ATGACTCTAGCACCGCGACACCTGCGCATAGAACAACGAGGACGCGTCCTGCAAGTCCTGCTCGACAATCCC
CCGGCGAACTTCCTCACCACGGCGGTGATGCAGGAACTGGCCGACCTGCTGGACGATCTGGAGCAGCGCCAG
GACATCGGTGCCGTCATCCTTTCCGGAGCGGCGGATGGGGTCTTCCTGACCCACTTCGACGTCGACGAGATC
GAGCGCGCCGTCGCCCCCATCACCTTCTCCATGCCGGCCTGGCTGACACGCCTGCTGCTGGAAAGCGAAAGC
CTCCTGCGCCACTTGCCTGGGGCGAGGAAGCTGCTGCGGCGCACCCTGCTGGCAGGCGTCGTCGACATGAAC
CTGTTCCATGAGGTTACCGCGCACATGCGCCGCATGGACAAGGTGTTCATCGCCGCGATCAACGGCCTGGCC
CTGGGCGGCGGCTGCGAGCTGGCGCTGGCCTGCGACCTGCGCCTGATGGCCGAGGACGACCAGGTGGAACGC
TTCCTCGGCCAGCCGGAAGTACTCATCGGCCTGATACCGGGAGGCGGCGGCACCCAGATGCTGGCGCGCAGC
CTGGGCGTAGCCAGGGCCCTGGAGCTGTGCCTGGAAGGGCAACTGCTGGAGCCGCGCCAGGCCCTTGCGCTG
GGCCTGGTCAACGGGCTGGCGCCAGCGGAGGAGCTACTGGAAGCCGCCGACGCGCTGGCGCAACGCCTGTCC
CGGCGCTCGCCGCAGGCGGTGCACCTGATCAAGCGTTCGATCTACCAGGCGGCTTCCCGCGACTGGACGGAG
GGTATGGCCAGCGAAAAGGCCGGCTTCCTCTCCGCCGCCTCCCAAGGCAATACCCGTCGCGCCATGCGCGAA
TACATCGAACGGGTGCGCACCATCACCCGCGAAGAGCGTCCTTTCCGCCGTGCGGATTTCGACGACCTGACC
GAAGGCAACGCCATCGACATGGCCTACAGGTGA