ViewGene
Locus Name:
GeneID:
Location:

GeneID:2348
TrivialName: PA14_30470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30470
PAO1 Ortholog Locus:PA2599
Sequence Length:945
Protein Length:314
Start: 2639073
Stop: 2640017
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05987.1|AE004688_9 (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 313/314 (99%), Positives = 313/314 (99%)
Sequence:
ATGAAACTCAAGCAATACCTGCTAACCAGCTTCGCCACGCTTCTGCTCGGTGCCTCCCTGGCCCAGGCCGCA
GACCTGCCGACGTTGCGTGTGGGCGACCAGAACTACTACAACGTGCGGGCTTCCATGGAGGCCTCGGGAGTT
CTCGAAGGCGCGCCTTACCAGGTCGAATGGAAGCATTTCCAGTCCGCCGCGCCGGTGGCCGAAGGGTTGCAG
GCCGGAGCGCTGGACCTGGGTTTCCTCGGCGACTCGGGCTTCATCTTCCTCGCCGCCAAGGGTGCGCCGGTG
AAGCTGGTCGGCGTCTCGCGGCAGAACCTCGATACCATAGCCCTGCTGGTGCCGAAGGATTCTCCGGTGCGC
AGCATTGCCGATCTCAAGGGCAGGAAAGTCGCCTACTGGCCCGGTGCCTGGAGCCAGCAACTGACCTTGCGC
GCGCTGGAGAAAGCCGGCTTGCCGAAGGACTACGTGGAGTTCGTCAAGCTGATGCCGATCGACGCCGCCGCC
GCCTTGCCGCGCGGCAGCATCGATGCCTTTCCGGTGTGGGAGCCGTATATCTCGCAGCAGATCGTGGTTTCC
GGCGCACGGCCGATTCTCACCGCCCGCGACCTGATGCCGGGGCTGTCCAGCATCGCCGCCAACGCTGCTTCC
ATCGAGCCCAGGCGCGCGCAGATCGCCGACTTCCTCGGCCGCCTGCGCAAGGCACGGGCCTGGGTCGAAGCA
CACAAGGAGCAGTACGCCGACCTCTGGGCGCAGAAGGCCAATCTCGACCGGGCAGTCTCCCGCCATTGGATC
GGCCAGGCCGGCATGAGCGTCGGCCCGGTAGACGCCCAGGCCGCCACCGACTACCAGGAGACCGCGGATTTC
CTGCTGCAGACCGGTGCCTTGCCCAAGCCGTTCGACACTTCCACGGTGATCGACACGTCCTTCAACGAAGCC
TTCCACTGA
Translation:
MKLKQYLLTSFATLLLGASLAQAADLPTLRVGDQNYYNVRASMEASGVLEGAPYQVEWKHFQSAAPVAEGLQ
AGALDLGFLGDSGFIFLAAKGAPVKLVGVSRQNLDTIALLVPKDSPVRSIADLKGRKVAYWPGAWSQQLTLR
ALEKAGLPKDYVEFVKLMPIDAAAALPRGSIDAFPVWEPYISQQIVVSGARPILTARDLMPGLSSIAANAAS
IEPRRAQIADFLGRLRKARAWVEAHKEQYADLWAQKANLDRAVSRHWIGQAGMSVGPVDAQAATDYQETADF
LLQTGALPKPFDTSTVIDTSFNEAFH*
AnnotationID:2356GeneID:2348
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:33
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic aliphatic sulfonate-binding protein
Cell Localization:()
Synonyms:PA2599
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68824.1|AE016515_3 (AE016786) periplasmic aliphatic sulfonate-binding protein,
           putative [Pseudomonas putida KT2440]
          Length = 312

 Score =  281 bits (718), Expect = 5e-75
 Identities = 147/305 (48%), Positives = 199/305 (65%), Gaps = 6/305 (1%)

>gb|AAO55308.1| (AE016862) ABC transporter, periplasmic substrate-binding protein,
           aliphatic sulfonates family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 323

 Score =  265 bits (678), Expect = 2e-70
 Identities = 145/309 (46%), Positives = 201/309 (65%), Gaps = 9/309 (2%)








 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  95.8% aligned
Score =  166 bits (420), Expect = 4e-42
Identities = 114/321 (35%), Positives = 144/321 (44%), Gaps = 9/321 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4699




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21845




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33169




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2348_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2348
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3987
                           PA2599_tr
                           translation of PA2599
                           314
                           99.68
                           99.68
                           0
                           1591.0
     

     
     
120656
                           gb|AAG05987.1|AE004688_9
                           (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           314
                           99.68
                           99.68
                           0
                           1591.0
     

     
     
120657
                           gb|AAN68824.1|AE016515_3
                           (AE016786) periplasmic aliphatic sulfonate-binding protein, putative [Pseudomonas putida KT2440]
                           320
                           47.81
                           63.12
                           14
                           725.0
     

     
     
120658
                           gb|AAO55308.1|
                           (AE016862) ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family [Pseudomonas syringae pv. tomato str. DC3000]
                           329
                           44.07
                           62.00
                           21
                           687.0
     

     
     
120659
                           dbj|BAC51715.1|
                           (AP005958) bll6450 [Bradyrhizobium japonicum USDA 110]
                           318
                           41.19
                           58.49
                           10
                           615.0
     

     






      

          
GC ORFID: 45350How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2599Glimmer Score: 

          
Start: 2314853Stop: 2313909

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2599 translation of PA2599Homolog Bit Score 617.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7768 (ORF: BLASTX 271.0), t_PA2596 (ORF: BLASTX 229.0), t_PA2599 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTCAAGCAATACCTGCTAACCAGCTTCGCCACGCTTCTGCTCGGTGCCTCCCTGGCCCAGGCCGCA 
GACCTGCCGACGTTGCGTGTGGGCGACCAGAACTACTACAACGTGCGGGCTTCCATGGAGGCCTCGGGAGTT 
CTCGAAGGCGCGCCTTACCAGGTCGAATGGAAGCATTTCCAGTCCGCCGCGCCGGTGGCCGAAGGGTTGCAG 
GCCGGAGCGCTGGACCTGGGTTTCCTCGGCGACTCGGGCTTCATCTTCCTCGCCGCCAAGGGTGCGCCGGTG 
AAGCTGGTCGGCGTCTCGCGGCAGAACCTCGATACCATAGCCCTGCTGGTGCCGAAGGATTCTCCGGTGCGC 
AGCATTGCCGATCTCAAGGGCAGGAAAGTCGCCTACTGGCCCGGTGCCTGGAGCCAGCAACTGACCTTGCGC 
GCGCTGGAGAAAGCCGGCTTGCCGAAGGACTACGTGGAGTTCGTCAAGCTGATGCCGATCGACGCCGCCGCC 
GCCTTGCCGCGCGGCAGCATCGATGCCTTTCCGGTGTGGGAGCCGTATATCTCGCAGCAGATCGTGGTTTCC 
GGCGCACGGCCGATTCTCACCGCCCGCGACCTGATGCCGGGGCTGTCCAGCATCGCCGCCAACGCTGCTTCC 
ATCGAGCCCAGGCGCGCGCAGATCGCCGACTTCCTCGGCCGCCTGCGCAAGGCACGGGCCTGGGTCGAAGCA 
CACAAGGAGCAGTACGCCGACCTCTGGGCGCAGAAGGCCAATCTCGACCGGGCAGTCTCCCGCCATTGGATC 
GGCCAGGCCGGCATGAGCGTCGGCCCGGTAGACGCCCAGGCCGCCACCGACTACCAGGAGACCGCGGATTTC 
CTGCTGCAGACCGGTGCCTTGCCCAAGCCGTTCGACACTTCCACGGTGATCGACACGTCCTTCAACGAAGCC 
TTCCACTGA