ViewGene
Locus Name:
GeneID:
Location:

GeneID:2346
TrivialName: PA14_37220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37220
PAO1 Ortholog Locus:PA2115
Sequence Length:954
Protein Length:317
Start: 3316761
Stop: 3315808
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05503.1|AE004639_1 (AE004639) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 316/317 (99%), Positives = 316/317 (99%)
Sequence:
ATGAACCTGAAATTCCTCGAGACCTTCGTCTGGGTCGCGCGCCTGAAGAGCTTCCGCCTCACCGCGGAGAAG
CTGTTCAGCACCCAGGCTTCCATTTCCAGCCGGATCGCCGTGCTGGAGGACGAACTCGGCGTGAAACTGTTC
GTCCGCGACTCTCGCGGCGTGACCCTGACCCCGGAAGGCGACAAGGTACTGGCCTACGCCGAGCGCATGATG
GACACCATGCACGCGCTGAAGCAGTCGCTCGACACCGGCGCCAGCACCCAGGGACGGATTCGCATCGGCGCC
ATGGACACGGTCATCCACACCTGGCTGAGCCCGTTGGTGGCCAGGGTCACGGAAACCTTCCCGGCGGTGGAG
ATCGAGCTGATGGCGGACACCGCGCGCAACCTCTCCGAGCAGTTGCAGAAGGGCTACCTGGACCTGATCTTC
CAGACCGACTCGCTGCGCCACGAGTCGGTGCTCAACCTGGAACTGGGCAGCTACCCGCTGCGCTGGATCGTC
TCCACCGGCTCGATCTACCACCGCGACTACGCCTCGCTGGCGGACCTGGCGCGGGAGCGGGTGGTGACCTTC
TCCAAGCACTCGCGGCCGCACCAGGACGTGCTCGGCCTGCTGCACGCCAACGGCGTCGCGGCACCGCGCCTG
AACTGCGTGAACTCGGTGGCGGCGATGACCCGCCTGCTGCGCGATGGCTTCGGCGTCGGCGCCTTGCCGCCG
GCGCTGGTCAGCCAGGAACTGGAACGCGGCGAACTGACCCTGCTGCGCCTCGGCCCGCCGCCGCCGAACCTG
CCGGTGGTGGTGTCCTGGCGCGGCGGCACCGGCCTGGAACTGGTGGACGAAGTGGTGGAGCTGAGCAAGACG
GTGCTGGCCGACTACGCGGCCAACGTCGGCCCGGAGTGCATGCTCCTGGCGCCGCTGAAGAAAGGAGTGGGG
CGGCTGCGTTCGCGCTGA
Translation:
MNLKFLETFVWVARLKSFRLTAEKLFSTQASISSRIAVLEDELGVKLFVRDSRGVTLTPEGDKVLAYAERMM
DTMHALKQSLDTGASTQGRIRIGAMDTVIHTWLSPLVARVTETFPAVEIELMADTARNLSEQLQKGYLDLIF
QTDSLRHESVLNLELGSYPLRWIVSTGSIYHRDYASLADLARERVVTFSKHSRPHQDVLGLLHANGVAAPRL
NCVNSVAAMTRLLRDGFGVGALPPALVSQELERGELTLLRLGPPPPNLPVVVSWRGGTGLELVDEVVELSKT
VLADYAANVGPECMLLAPLKKGVGRLRSR*
AnnotationID:2354GeneID:2346
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:15
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional regulator
Cell Localization:()
Synonyms:PA2115
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70152.1|AE016654_9 (AE016791) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 303

 Score =  407 bits (1047), Expect = e-113
 Identities = 208/304 (68%), Positives = 251/304 (82%), Gaps = 2/304 (0%)

>emb|CAE33472.1| (BX640446) putative LysR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 310

 Score =  233 bits (593), Expect = 1e-60
 Identities = 128/311 (41%), Positives = 190/311 (61%), Gaps = 4/311 (1%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  92.9% aligned
Score =  138 bits (349), Expect = 6e-34
Identities = 85/279 (30%), Positives = 127/279 (45%), Gaps = 6/279 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  92.3% aligned
Score =  110 bits (276), Expect = 2e-25
Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 1/193 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21841




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32602




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2346_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2346
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3985
                           PA2115_tr
                           translation of PA2115
                           317
                           99.68
                           99.68
                           0
                           1592.0
     

     
     
120647
                           gb|AAG05503.1|AE004639_1
                           (AE004639) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           317
                           99.68
                           99.68
                           0
                           1592.0
     

     
     
120648
                           gb|AAN70152.1|AE016654_9
                           (AE016791) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           317
                           65.61
                           79.17
                           14
                           1049.0
     

     
     
120649
                           emb|CAE33472.1|
                           (BX640446) putative LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           317
                           40.69
                           60.25
                           7
                           597.0
     

     
     
120650
                           emb|CAE38304.1|
                           (BX640432) putative LysR-family transcriptional regulator [Bordetella parapertussis]
                           317
                           40.69
                           60.25
                           7
                           597.0
     

     






      

          
GC ORFID: 45348How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2115Glimmer Score: 

          
Start: 1637153Stop: 1638106

          
Length: 954


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2115 translation of PA2115Homolog Bit Score 617.0

          
Other Homologs:  t_PA2115 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGAAATTCCTCGAGACCTTCGTCTGGGTCGCGCGCCTGAAGAGCTTCCGCCTCACCGCGGAGAAG 
CTGTTCAGCACCCAGGCTTCCATTTCCAGCCGGATCGCCGTGCTGGAGGACGAACTCGGCGTGAAACTGTTC 
GTCCGCGACTCTCGCGGCGTGACCCTGACCCCGGAAGGCGACAAGGTACTGGCCTACGCCGAGCGCATGATG 
GACACCATGCACGCGCTGAAGCAGTCGCTCGACACCGGCGCCAGCACCCAGGGACGGATTCGCATCGGCGCC 
ATGGACACGGTCATCCACACCTGGCTGAGCCCGTTGGTGGCCAGGGTCACGGAAACCTTCCCGGCGGTGGAG 
ATCGAGCTGATGGCGGACACCGCGCGCAACCTCTCCGAGCAGTTGCAGAAGGGCTACCTGGACCTGATCTTC 
CAGACCGACTCGCTGCGCCACGAGTCGGTGCTCAACCTGGAACTGGGCAGCTACCCGCTGCGCTGGATCGTC 
TCCACCGGCTCGATCTACCACCGCGACTACGCCTCGCTGGCGGACCTGGCGCGGGAGCGGGTGGTGACCTTC 
TCCAAGCACTCGCGGCCGCACCAGGACGTGCTCGGCCTGCTGCACGCCAACGGCGTCGCGGCACCGCGCCTG 
AACTGCGTGAACTCGGTGGCGGCGATGACCCGCCTGCTGCGCGATGGCTTCGGCGTCGGCGCCTTGCCGCCG 
GCGCTGGTCAGCCAGGAACTGGAACGCGGCGAACTGACCCTGCTGCGCCTCGGCCCGCCGCCGCCGAACCTG 
CCGGTGGTGGTGTCCTGGCGCGGCGGCACCGGCCTGGAACTGGTGGACGAAGTGGTGGAGCTGAGCAAGACG 
GTGCTGGCCGACTACGCGGCCAACGTCGGCCCGGAGTGCATGCTCCTGGCGCCGCTGAAGAAAGGAGTGGGG 
CGGCTGCGTTCGCGCTGA