ViewGene
Locus Name:
GeneID:
Location:

GeneID:2344
TrivialName: PA14_72140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72140
PAO1 Ortholog Locus:PA5466
Sequence Length:945
Protein Length:314
Start: 6428188
Stop: 6429132
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08851.1|AE004959_7 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 314/314 (100%), Positives = 314/314 (100%)
Sequence:
ATGAGCGGATTCCACTATCCGGGGGTGCCCGTGACCGCTCTGCTCTACTCCCTCTGGCCGCTGTTCGCCCTC
ATCGTCGGCGGTTACGCCCTGCGCCGCTGGGACTTTCCCGGCGAAGCCTTCTGGCCTGCCGCAGAACGCCTG
AACTACTTCATCCTGTTTCCCGCGCTGCTGTTCAGCAACCTGGCGACCGCGCCGCTGGACGACCCCGGCCTG
GCCCGCCAGGCCCTGGCCGTACTGCTCGGGCTCGGCGTCGCCTGGCTCGCCCTGCTGCTCTGCAAGCGCTGG
CGCGGCTGGGACGCCGGGCGCTTCGGCGCCATCGCCCAGGGCGTATTGCGCTTCAACACCTATCTCGGCCTG
GCCGCGGTCGGCAGCCTGTACGGCAAGCCGGGGCTGACCCTGGCCGCGCTGATGCTGGCGCTGATGGTGCCG
ACGGTGAACGTGATGTCGGTCTGGGCGCTGACCGCCGAGCGCGGCATCAGCCTGCGCGCGCTGCTGCTGCCG
ATTCTGAAGAACCCGCTGATCCTCGCCTGCCTCGCCGGCGCACTGGTCAACCTGGCCGGCGTCGGCCTGCCC
GGCGGCAGCGATCGCCTGCTCAACCTGCTGGCGGTGGCCAGCCTGCCGCTGGGCCTGCTGTGCGTCGGCGCG
GCGCTGAAACCCCAGGAACTCGGCGGCGAAGTCGCGGCCCTTGGCTGGAACTGCGCGGCGCGGCTGCTGGCG
ATGCCCCTGCTGGCCTTCGCCATCGCTCGCGGGCTGGGCCTGCCGAGCATGGAAAGCGCCGTGCTGGTGCTG
TTCTTCGCCCTGCCGACGGCGCCCACCGCCTATGTGCTGACCCGCCAACTGGGCGGCGACGGCCACCTGATG
GCGGGCATCATCACCTTGCAAACGCTGCTTTCCGGCGCCACTCTGGTCGGCGTACTCCTCGTGCTGCAAGGA
AGCCCATGA
Translation:
MSGFHYPGVPVTALLYSLWPLFALIVGGYALRRWDFPGEAFWPAAERLNYFILFPALLFSNLATAPLDDPGL
ARQALAVLLGLGVAWLALLLCKRWRGWDAGRFGAIAQGVLRFNTYLGLAAVGSLYGKPGLTLAALMLALMVP
TVNVMSVWALTAERGISLRALLLPILKNPLILACLAGALVNLAGVGLPGGSDRLLNLLAVASLPLGLLCVGA
ALKPQELGGEVAALGWNCAARLLAMPLLAFAIARGLGLPSMESAVLVLFFALPTAPTAYVLTRQLGGDGHLM
AGIITLQTLLSGATLVGVLLVLQGSP*
AnnotationID:2352GeneID:2344
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:51
Gene Name:
Confidence Code:4
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA5466
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0679
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0679, Predicted permeases
CD-Length = 311 residues,  99.4% aligned
Score =  159 bits (404), Expect = 3e-40
Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 6/309 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4691




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21837




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34633




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2344_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2344
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3983
                           PA5466_tr
                           translation of PA5466
                           314
                           99.99
                           99.99
                           0
                           1594.0
     

     
     
120639
                           gb|AAG08851.1|AE004959_7
                           (AE004959) hypothetical protein PA5466 [Pseudomonas aeruginosa PAO1]
                           314
                           99.99
                           99.99
                           0
                           1594.0
     

     
     
120640
                           gb|AAN69162.1|AE016550_4
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           320
                           39.06
                           55.00
                           11
                           531.0
     

     
     
120642
                           emb|CAE38902.1|
                           (BX640434) putative membrane protein [Bordetella parapertussis]
                           348
                           38.79
                           52.29
                           56
                           516.0
     

     
     
120643
                           emb|CAE40629.1|
                           (BX640411) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           348
                           38.50
                           52.01
                           56
                           510.0
     

     






      

          
GC ORFID: 45346How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5466Glimmer Score: 

          
Start: 5691877Stop: 5692821

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5466 translation of PA5466Homolog Bit Score 618.0

          
Other Homologs:  t_PA5466 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGGATTCCACTATCCGGGGGTGCCCGTGACCGCTCTGCTCTACTCCCTCTGGCCGCTGTTCGCCCTC 
ATCGTCGGCGGTTACGCCCTGCGCCGCTGGGACTTTCCCGGCGAAGCCTTCTGGCCTGCCGCAGAACGCCTG 
AACTACTTCATCCTGTTTCCCGCGCTGCTGTTCAGCAACCTGGCGACCGCGCCGCTGGACGACCCCGGCCTG 
GCCCGCCAGGCCCTGGCCGTACTGCTCGGGCTCGGCGTCGCCTGGCTCGCCCTGCTGCTCTGCAAGCGCTGG 
CGCGGCTGGGACGCCGGGCGCTTCGGCGCCATCGCCCAGGGCGTATTGCGCTTCAACACCTATCTCGGCCTG 
GCCGCGGTCGGCAGCCTGTACGGCAAGCCGGGGCTGACCCTGGCCGCGCTGATGCTGGCGCTGATGGTGCCG 
ACGGTGAACGTGATGTCGGTCTGGGCGCTGACCGCCGAGCGCGGCATCAGCCTGCGCGCGCTGCTGCTGCCG 
ATTCTGAAGAACCCGCTGATCCTCGCCTGCCTCGCCGGCGCACTGGTCAACCTGGCCGGCGTCGGCCTGCCC 
GGCGGCAGCGATCGCCTGCTCAACCTGCTGGCGGTGGCCAGCCTGCCGCTGGGCCTGCTGTGCGTCGGCGCG 
GCGCTGAAACCCCAGGAACTCGGCGGCGAAGTCGCGGCCCTTGGCTGGAACTGCGCGGCGCGGCTGCTGGCG 
ATGCCCCTGCTGGCCTTCGCCATCGCTCGCGGGCTGGGCCTGCCGAGCATGGAAAGCGCCGTGCTGGTGCTG 
TTCTTCGCCCTGCCGACGGCGCCCACCGCCTATGTGCTGACCCGCCAACTGGGCGGCGACGGCCACCTGATG 
GCGGGCATCATCACCTTGCAAACGCTGCTTTCCGGCGCCACTCTGGTCGGCGTACTCCTCGTGCTGCAAGGA 
AGCCCATGA