ViewGene
Locus Name:
GeneID:
Location:

GeneID:2343
TrivialName: PA14_09950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09950
PAO1 Ortholog Locus:PA4170
Sequence Length:933
Protein Length:310
Start: 855861
Stop: 854929
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07557.1|AE004833_8 (AE004833) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 309/310 (99%), Positives = 309/310 (99%)
Sequence:
ATGAAACTTACGTTGTTGCGTGACTATCCGAATGGGAGATACGCCATGACTTTCGACGTGATCATCGTGGGC
GGCAGCTACGCCGGCATCTCCGCGGGCATGCAACTGGCGCGGGCGCGGCGCAGGGTGCTGGTGATGGATACG
GGACTGCGACGCAACCGCTTCGCCCGGGCCTCCCACGGCTTTCTCGGCCAGGACGGCCGCGATCCGGCGGCC
ATCGCCGATGACGCCCGCGCCCAGTTGCTGGCCTATCCCAGCGTCGAGTGGCTGTCCGAAGCCGCCGTCGCG
GCGAAGAAGGAGGCGGACGGTTTCGTGGTGAAGGCCGCCAACGGAGAACGCTTCACCGCGCGCCGGCTGATC
CTCGCCAGCGGGGTCGCCGACGAGCTGCCGGAGATCCCCGGTCTTGCCGAGCGCTGGGGACGGCACGTGTTC
CATTGCCCGTATTGCCACGGCTACGAACTGGACGGCGGGCCGATTGGCGTACTGGCGGCCTCACCGCTGGCC
ATCCACCACGCCCTGATGTTGCCCGACTGGGGAGCGACCACCTTTTTCCTCAACGGCGTCTTCGAACCGGAT
GCCGAGCAAATGTCCAGGCTGGACCGGCGCGGCGTGACGATCGAGCGCGAAGCCGTGGTCGCGCTGGGCGGC
GCGCGCGCCGACGTGACCCTGGCCAGTGGCCGCACGATTACGCTCGCGGGGTTGTTCACCCAGCCGCGTACG
CGCATGGCCAGCCCGCTGGCGGCGTTGCTCGGCTGCGAGTTCGAGGACGGCCCGAGCGGGCCGTTCATCAGG
ACCGACGGCATGCGCGAAACCAGCGTTCCCGGCGTCTTCGCCTGCGGCGACGCGGCGCTGGCGGCCGGCAAC
GTCGCCATCGCGGTGGGCGACGGCGCGCGCACCGGTGGCGCGGCGCATCATTCGCTGCTGTTCCGCTGA
Translation:
MKLTLLRDYPNGRYAMTFDVIIVGGSYAGISAGMQLARARRRVLVMDTGLRRNRFARASHGFLGQDGRDPAA
IADDARAQLLAYPSVEWLSEAAVAAKKEADGFVVKAANGERFTARRLILASGVADELPEIPGLAERWGRHVF
HCPYCHGYELDGGPIGVLAASPLAIHHALMLPDWGATTFFLNGVFEPDAEQMSRLDRRGVTIEREAVVALGG
ARADVTLASGRTITLAGLFTQPRTRMASPLAALLGCEFEDGPSGPFIRTDGMRETSVPGVFACGDAALAAGN
VAIAVGDGARTGGAAHHSLLFR*
AnnotationID:2351GeneID:2343
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 20:08:10
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4170
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0492
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC41797.1| (AL591783) PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium meliloti]
          Length = 301

 Score =  357 bits (915), Expect = 7e-98
 Identities = 182/294 (61%), Positives = 212/294 (72%), Gaps = 1/294 (0%)

>gb|AAL41260.1| (AE008996) oxidoreductase [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 297

 Score =  352 bits (904), Expect = 1e-96
 Identities = 175/294 (59%), Positives = 209/294 (71%), Gaps = 1/294 (0%)







 
Structural Features:
COG0492, TrxB, Thioredoxin reductase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 305 residues,  99.0% aligned
Score =  173 bits (440), Expect = 2e-44
Identities = 80/308 (25%), Positives = 122/308 (39%), Gaps = 19/308 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21835




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36905




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2343_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2343
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3982
                           PA4170_tr
                           translation of PA4170
                           310
                           99.67
                           99.67
                           0
                           1594.0
     

     
     
120634
                           gb|AAG07557.1|AE004833_8
                           (AE004833) hypothetical protein PA4170 [Pseudomonas aeruginosa PAO1]
                           310
                           99.67
                           99.67
                           0
                           1594.0
     

     
     
120635
                           emb|CAC41797.1|
                           (AL591783) PUTATIVE OXIDOREDUCTASE PROTEIN [Sinorhizobium meliloti]
                           312
                           58.33
                           67.94
                           13
                           907.0
     

     
     
120636
                           gb|AAL41260.1|
                           (AE008996) oxidoreductase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           313
                           55.91
                           66.77
                           19
                           904.0
     

     
     
120637
                           gb|AAK86054.1|
                           (AE007963) AGR_C_405p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           313
                           55.91
                           66.77
                           19
                           904.0
     

     






      

          
GC ORFID: 45345How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4170Glimmer Score: 

          
Start: 4098076Stop: 4099008

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4170 translation of PA4170Homolog Bit Score 618.0

          
Other Homologs:  t_PA4170 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTTACGTTGTTGCGTGACTATCCGAATGGGAGATACGCCATGACTTTCGACGTGATCATCGTGGGC 
GGCAGCTACGCCGGCATCTCCGCGGGCATGCAACTGGCGCGGGCGCGGCGCAGGGTGCTGGTGATGGATACG 
GGACTGCGACGCAACCGCTTCGCCCGGGCCTCCCACGGCTTTCTCGGCCAGGACGGCCGCGATCCGGCGGCC 
ATCGCCGATGACGCCCGCGCCCAGTTGCTGGCCTATCCCAGCGTCGAGTGGCTGTCCGAAGCCGCCGTCGCG 
GCGAAGAAGGAGGCGGACGGTTTCGTGGTGAAGGCCGCCAACGGAGAACGCTTCACCGCGCGCCGGCTGATC 
CTCGCCAGCGGGGTCGCCGACGAGCTGCCGGAGATCCCCGGTCTTGCCGAGCGCTGGGGACGGCACGTGTTC 
CATTGCCCGTATTGCCACGGCTACGAACTGGACGGCGGGCCGATTGGCGTACTGGCGGCCTCACCGCTGGCC 
ATCCACCACGCCCTGATGTTGCCCGACTGGGGAGCGACCACCTTTTTCCTCAACGGCGTCTTCGAACCGGAT 
GCCGAGCAAATGTCCAGGCTGGACCGGCGCGGCGTGACGATCGAGCGCGAAGCCGTGGTCGCGCTGGGCGGC 
GCGCGCGCCGACGTGACCCTGGCCAGTGGCCGCACGATTACGCTCGCGGGGTTGTTCACCCAGCCGCGTACG 
CGCATGGCCAGCCCGCTGGCGGCGTTGCTCGGCTGCGAGTTCGAGGACGGCCCGAGCGGGCCGTTCATCAGG 
ACCGACGGCATGCGCGAAACCAGCGTTCCCGGCGTCTTCGCCTGCGGCGACGCGGCGCTGGCGGCCGGCAAC 
GTCGCCATCGCGGTGGGCGACGGCGCGCGCACCGGTGGCGCGGCGCATCATTCGCTGCTGTTCCGCTGA