ViewGene

Locus Name:
GeneID:
Location:

GeneID:2342
TrivialName: PA14_71160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71160
PAO1 Ortholog Locus:PA5388
Sequence Length:939
Protein Length:312
Start: 6339712
Stop: 6338774
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08773.1|AE004951_7 (AE004951) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 312/312 (100%), Positives = 312/312 (100%)
Sequence:
ATGAAGACGACGATTCGCCAGCTGGGCTGCGCCCTGCTGATCCTGGCCAGTGGCGCCGCCCTGGCCGCAGAA
CCCGAGCAGTGCCGTACGGTGCGCCTGGGCACGGTGAACTGGACCGACGTGGTCGCCAGCAGCGCCGTGGCC
GAAGCCTTGCTCGATGGCCTGGGCTACCAGGTGAAGCAGACCAGCGCCTCGCAACAGATCGTTTTGGCCGGC
CTGGCCGACAAGCAGCTGGACCTGTTCCTCGGCTACTGGCAACCGACCATGCAGCCGGTCGCCAGGCCTTAC
CTGGACAAAGGCCGGATCGAAGTGATCGAGCCACCGACCCTGGCCGACGCGCAGTCCACCTATGCGGTGCCG
AGCTACGTCGCCGAGGGCGGGCTGAAGACCTTCGCCGACATCGCCCGCTTCAAGGACAAGCTTGGCGGCCGC
ATCTACGCCATCGAGCCGGGCAGCGGCTCGAACCGCATCACCCGGAAGATGATCGACGACAACCGTTTCGGC
CTGAAGGGCTTCCAACTGGTGGAGTCCAGCGAGGCCGGGATGCTCACGGCGGTGAAGCGGGCGATCAAGCGC
AAGCAGTGGGTGGTGTTCTTCGGCTGGAAGCCGCATCCGATGAACCTGCAGATCGACATGACCTACCTCACC
GGCAGCGAGGATGTGTTCGGTCCCGACGAGGGCGCGGCCACCGTCTCCACCATGACCGCCGCCGGCTACCAG
GCGCAGTGCGGCAACGTCGCCCGGCTGCTGCACAACCTGCGCTTCAGCAGCGCCCAGGTCAGCCAGGTGATG
GCGCCGATCCTCGATCGCACCCAGCCCCTCGACGCCGCGCGCCAGTGGCTGAAGGCCAACCCCGAGCCGCTG
AAGGCCTGGCTGGATGGCGTGAGCACCTTCGACGGCAAGGACGGCCTGGCCGCGCTCCAGGCCTCGCTGAAG
TAA
Translation:
MKTTIRQLGCALLILASGAALAAEPEQCRTVRLGTVNWTDVVASSAVAEALLDGLGYQVKQTSASQQIVLAG
LADKQLDLFLGYWQPTMQPVARPYLDKGRIEVIEPPTLADAQSTYAVPSYVAEGGLKTFADIARFKDKLGGR
IYAIEPGSGSNRITRKMIDDNRFGLKGFQLVESSEAGMLTAVKRAIKRKQWVVFFGWKPHPMNLQIDMTYLT
GSEDVFGPDEGAATVSTMTAAGYQAQCGNVARLLHNLRFSSAQVSQVMAPILDRTQPLDAARQWLKANPEPL
KAWLDGVSTFDGKDGLAALQASLK*
AnnotationID:2350GeneID:2342
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:33
Gene Name:
Confidence Code:3
GeneProduct:putative glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein
Cell Localization:()
Synonyms:PA5388
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2113,pfam04069
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54008.1| (AE016857) glycine betaine/L-proline ABC transporter, periplasmic
           substrate-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 315

 Score =  287 bits (734), Expect = 6e-77
 Identities = 148/296 (50%), Positives = 193/296 (65%), Gaps = 5/296 (1%)

>emb|CAC48796.1| (AL603643) putative glycine-betaine-binding protein [Sinorhizobium
           meliloti]
          Length = 312

 Score =  286 bits (732), Expect = 1e-76
 Identities = 140/301 (46%), Positives = 197/301 (65%), Gaps = 2/301 (0%)

>gb|AAL51622.1| (AE009487) GLYCINE BETAINE/L-PROLINE-BINDING PROTEIN PROX [Brucella
           melitensis 16M]
          Length = 326

 Score =  285 bits (730), Expect = 2e-76
 Identities = 144/292 (49%), Positives = 186/292 (63%), Gaps = 2/292 (0%)

Structural Features:
COG2113, ProX, ABC-type proline/glycine betaine transport systems, 
periplasmic components 
[Amino acid transport and metabolism]
CD-Length = 302 residues,  96.0% aligned
Score =  298 bits (765), Expect = 4e-82
Identities = 123/291 (42%), Positives = 169/291 (58%), Gaps = 2/291 (0%)

pfam04069, OpuAC, Substrate binding domain of ABC-type 
glycine betaine transport system. 
CD-Length = 260 residues, 100.0% aligned
Score =  215 bits (550), Expect = 3e-57
Identities = 82/266 (30%), Positives = 135/266 (50%), Gaps = 7/266 (2%)
Genomic Context:
Comment:
ReferenceID:4687
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21833
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34707
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2342_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2342

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3979 PA5388_tr translation of PA5388 312 99.99 99.99 0 1596.0
120611 gb|AAG08773.1|AE004951_7 (AE004951) hypothetical protein PA5388 [Pseudomonas aeruginosa PAO1] 312 99.99 99.99 0 1596.0
120612 gb|AAN65935.1|AE016221_7 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 322 54.03 69.56 10 899.0
120619 gb|AAN65927.1|AE016220_9 (AE016775) glycine betaine/L-proline ABC transporter, periplasmic binding protein [Pseudomonas putida KT2440] 317 48.26 62.46 7 714.0
120614 gb|AAO54008.1| (AE016857) glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 322 47.20 61.80 17 741.0
GC ORFID: 45344How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5388Glimmer Score:
Start: 5603401Stop: 5602463
Length: 939
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5388 translation of PA5388Homolog Bit Score 619.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7149 (ORF: BLASTX 356.0), t_PA5378 (ORF: BLASTX 288.0), t_PA0030 (ORF: BLASTX 233.0), psyr_15may02_Scaffold2_revised_gene4093 (ORF: BLASTX 227.0), t_PA5388 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACGACGATTCGCCAGCTGGGCTGCGCCCTGCTGATCCTGGCCAGTGGCGCCGCCCTGGCCGCAGAA
CCCGAGCAGTGCCGTACGGTGCGCCTGGGCACGGTGAACTGGACCGACGTGGTCGCCAGCAGCGCCGTGGCC
GAAGCCTTGCTCGATGGCCTGGGCTACCAGGTGAAGCAGACCAGCGCCTCGCAACAGATCGTTTTGGCCGGC
CTGGCCGACAAGCAGCTGGACCTGTTCCTCGGCTACTGGCAACCGACCATGCAGCCGGTCGCCAGGCCTTAC
CTGGACAAAGGCCGGATCGAAGTGATCGAGCCACCGACCCTGGCCGACGCGCAGTCCACCTATGCGGTGCCG
AGCTACGTCGCCGAGGGCGGGCTGAAGACCTTCGCCGACATCGCCCGCTTCAAGGACAAGCTTGGCGGCCGC
ATCTACGCCATCGAGCCGGGCAGCGGCTCGAACCGCATCACCCGGAAGATGATCGACGACAACCGTTTCGGC
CTGAAGGGCTTCCAACTGGTGGAGTCCAGCGAGGCCGGGATGCTCACGGCGGTGAAGCGGGCGATCAAGCGC
AAGCAGTGGGTGGTGTTCTTCGGCTGGAAGCCGCATCCGATGAACCTGCAGATCGACATGACCTACCTCACC
GGCAGCGAGGATGTGTTCGGTCCCGACGAGGGCGCGGCCACCGTCTCCACCATGACCGCCGCCGGCTACCAG
GCGCAGTGCGGCAACGTCGCCCGGCTGCTGCACAACCTGCGCTTCAGCAGCGCCCAGGTCAGCCAGGTGATG
GCGCCGATCCTCGATCGCACCCAGCCCCTCGACGCCGCGCGCCAGTGGCTGAAGGCCAACCCCGAGCCGCTG
AAGGCCTGGCTGGATGGCGTGAGCACCTTCGACGGCAAGGACGGCCTGGCCGCGCTCCAGGCCTCGCTGAAG
TAA