ViewGene
Locus Name:
GeneID:
Location:

GeneID:2340
TrivialName: PA14_25910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25910
PAO1 Ortholog Locus:PA2949
Sequence Length:948
Protein Length:315
Start: 2260970
Stop: 2260023
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06337.1|AE004721_5 (AE004721) probable lipase [Pseudomonas aeruginosa PAO1]
Identities = 314/315 (99%), Positives = 314/315 (99%)
Sequence:
ATGAAACGATTCCTCCTCGGTCTGGCTCTGCTGCTGGCGGTCGCCGCCGGCGTCCTCTACTTCGTCCCGGCT
ACCCTCCTCGCCAGCGTACGCACCGTCGAGCGCGGCCTCGCCGGTCTCAGCGAGCACAGCGTGCAGGTCGAC
AACCTGGAGATCGCCTACCTGGAAGGCGGCTCGGAGAAGAACCCGACCCTGTTGCTGATCCACGGCTTCGGC
GCCGACAAGGACAACTGGCTGCGCTTCGCCCGGCCGCTGACCGAGCGCTACCATGTGGTCGCCCTCGACCTG
CCCGGCTTCGGCGACAGCAGCAAGCCGCAACAGGCCAGCTACGACGTCGGCACCCAGGCCGAGCGAGTCGCC
AATTTCGCCGCCGCCATCGGCGTGCGCCGCCTGCACCTGGCCGGCAACTCCATGGGCGGGCACATCGCCGCG
CTCTACGCGGCGCGCCATCCGGAACAGGTGCTATCGCTGGCGCTGATCGACAACGCCGGGGTGATGCCGGCG
CGCAAGAGCGAACTGTTCGAGGACCTGGAGCGCGGCGAGAATCCCCTGGTGGTGCGCCAGCCGGAAGACTTC
CAGAAGCTGCTCGACTTCGTGTTCGTCCAGCAACCGCCGCTGCCGGCGCCGCTCAAGCGCTACCTCGGCGAA
CGCGCGGTAGCCGCGTCGGCGTTCAACGCGCAGATATTCGAACAACTGCGCCAGCGCTACATCCCGCTGGAG
CCGGAACTGCCGAAGATCGAGGCACCGACCCTGCTGCTGTGGGGCGACCGCGACCGCGTGCTGGACGTCTCC
AGCATCGAGGTGATGCGTCCGCTGCTGAAGCGGCCCAGCGTGGTGATCATGGAAAACTGCGGACATGTGCCG
ATGGTCGAACGCCCGGAGGAAACCGCGCAGCACTACCAGGCCTTCCTCGACGGCGTACGGAACGCCCAGGTG
GCCGGTCGCTGA
Translation:
MKRFLLGLALLLAVAAGVLYFVPATLLASVRTVERGLAGLSEHSVQVDNLEIAYLEGGSEKNPTLLLIHGFG
ADKDNWLRFARPLTERYHVVALDLPGFGDSSKPQQASYDVGTQAERVANFAAAIGVRRLHLAGNSMGGHIAA
LYAARHPEQVLSLALIDNAGVMPARKSELFEDLERGENPLVVRQPEDFQKLLDFVFVQQPPLPAPLKRYLGE
RAVAASAFNAQIFEQLRQRYIPLEPELPKIEAPTLLLWGDRDRVLDVSSIEVMRPLLKRPSVVIMENCGHVP
MVERPEETAQHYQAFLDGVRNAQVAGR*
AnnotationID:2348GeneID:2340
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:04
Gene Name:
Confidence Code:3
GeneProduct:putative lipase
Cell Localization:()
Synonyms:PA2949
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative esterase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK07450.1|AF324946_1 (AF324946) triacylglycerol acyl hydrolase [Moritella marina]
          Length = 315

 Score =  226 bits (575), Expect = 2e-58
 Identities = 124/313 (39%), Positives = 193/313 (61%), Gaps = 16/313 (5%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4683




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21829




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36101




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2340_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2340
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3977
                           PA2949_tr
                           translation of PA2949
                           315
                           99.68
                           99.68
                           0
                           1596.0
     

     
     
120605
                           gb|AAG06337.1|AE004721_5
                           (AE004721) probable lipase [Pseudomonas aeruginosa PAO1]
                           315
                           99.68
                           99.68
                           0
                           1596.0
     

     
     
120606
                           gb|AAF89744.1|
                           (AF170828) esterase [Pseudomonas aeruginosa]
                           315
                           99.68
                           99.68
                           0
                           1596.0
     

     






      

          
GC ORFID: 45342How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2949Glimmer Score: 

          
Start: 2692955Stop: 2693902

          
Length: 948


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2949 translation of PA2949Homolog Bit Score 619.0

          
Other Homologs:  t_PA2949 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGATTCCTCCTCGGTCTGGCTCTGCTGCTGGCGGTCGCCGCCGGCGTCCTCTACTTCGTCCCGGCT 
ACCCTCCTCGCCAGCGTACGCACCGTCGAGCGCGGCCTCGCCGGTCTCAGCGAGCACAGCGTGCAGGTCGAC 
AACCTGGAGATCGCCTACCTGGAAGGCGGCTCGGAGAAGAACCCGACCCTGTTGCTGATCCACGGCTTCGGC 
GCCGACAAGGACAACTGGCTGCGCTTCGCCCGGCCGCTGACCGAGCGCTACCATGTGGTCGCCCTCGACCTG 
CCCGGCTTCGGCGACAGCAGCAAGCCGCAACAGGCCAGCTACGACGTCGGCACCCAGGCCGAGCGAGTCGCC 
AATTTCGCCGCCGCCATCGGCGTGCGCCGCCTGCACCTGGCCGGCAACTCCATGGGCGGGCACATCGCCGCG 
CTCTACGCGGCGCGCCATCCGGAACAGGTGCTATCGCTGGCGCTGATCGACAACGCCGGGGTGATGCCGGCG 
CGCAAGAGCGAACTGTTCGAGGACCTGGAGCGCGGCGAGAATCCCCTGGTGGTGCGCCAGCCGGAAGACTTC 
CAGAAGCTGCTCGACTTCGTGTTCGTCCAGCAACCGCCGCTGCCGGCGCCGCTCAAGCGCTACCTCGGCGAA 
CGCGCGGTAGCCGCGTCGGCGTTCAACGCGCAGATATTCGAACAACTGCGCCAGCGCTACATCCCGCTGGAG 
CCGGAACTGCCGAAGATCGAGGCACCGACCCTGCTGCTGTGGGGCGACCGCGACCGCGTGCTGGACGTCTCC 
AGCATCGAGGTGATGCGTCCGCTGCTGAAGCGGCCCAGCGTGGTGATCATGGAAAACTGCGGACATGTGCCG 
ATGGTCGAACGCCCGGAGGAAACCGCGCAGCACTACCAGGCCTTCCTCGACGGCGTACGGAACGCCCAGGTG 
GCCGGTCGCTGA