ViewGene
Locus Name:
GeneID:
Location:

GeneID:234
TrivialName: PA14_52230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52230
PAO1 Ortholog Locus:PA0931
Sequence Length:2229
Protein Length:742
Start: 4633327
Stop: 4631099
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04320.1|AE004527_7 (AE004527) siderophore receptor protein [Pseudomonas aeruginosa PAO1]
Identities = 741/742 (99%), Positives = 741/742 (99%)
Sequence:
ATGTACCCCCAATTCCGTCGCGGCCATCTCGCCGCTGCCGTCCTTTTCGCTTCATCGAGCCTGCTGGGCGGG
CAGGCCCTGGCCGAGGACGAGCGCCTGGAAGAACTGGACGAACGCGCCGAGTCGGTGGTCCAGCTGGGTGAC
GAGGTGGTGCTGGGCACCGCCGAACAGGAGCTCAAGCAGGCACCGGGGGTATCCATCATCACCGCCGAGGAC
ATCAGGAAGCGCCCGCCGGTGAACGATCTCTCCGAGATCATCCGCACCATGCCCGGGGTCAACCTCACCGGC
AACAGTTCCAGCGGCCAGCGCGGCAACAACCGGCAGATCGACATCCGCGGCATGGGGCCGGAGAACACCCTG
ATCCTGGTCGATGGCAAGCCGGTCAGCTCGCGCAACTCGGTGCGCTACGGCTGGCGTGGCGAACGCGACACC
CGCGGCGACAGCAACTGGGTGCCGCCGGAGGAGGTCGAGCGCATCGAGGTCCTCCGTGGGCCCGCGGCGGCA
CGCTACGGTTCCGGCGCGGCGGGCGGGGTAGTCAACATCATCACCAAGCGCCCGACCGATCGTTTGCGTGGC
TCCATGACGGTGTTCACCAACATTCCGGAAAGCTCCAAGGATGGCGCCACGCGCCGCGCCAACTTCAGCCTC
AGCGGGCCGCTGACCGAAGCCTTGAGCTTCCGCGCGTACGGCAGCGCGAACAAGACCGATTCGGACGATACC
GACATCAACCTCGGACATACCGTCAACCCGAGCCGTACCGTGGCCGGACGCGAAGGGGTACGCAATCGCGAT
CTCAGCGGGATGCTGTCGTGGCAGGTGACCCCCGACCAGGTCGTCGATTTCGAAGCGGGCTTCAGCCGACAG
GGCAACATCTATGCCGGCGATACCCAGAACAACAACGGCACCGCCAATACCCAGGGACTCGCCGACGACGGT
GCGGAGACCAACCGCATGTATCGCGAGAACTACGCCATCACCCACAACGGGACCTGGTCGTTCGGTACTTCC
AGGTTCGTCGCCCAGTACGACTCCACCCGCAACAACCGTCTGGAGGAGGGGCTGGCCGGTTCCGTCGAGGGG
CAGATCGGCGCCGACCGTTCGTTCAGCACCAGCAAGCTGGAGAACTATCGCCTCAGCGGCGAACTCAACCTT
CCGTTGCATGCGTTGTTCGAGCAGGTGCTGACGGTGGGCGCGGAGTGGAACAAGGAAACCCTCAACGACCCG
TCCTCGCTCAAGCAGGGCTTCGTGGGAAGCGATAGCTTGCCGGGGACCCCCGCGGCCGGCTCGCGAAGCCCG
AAAAGCAAGGCGGAGATCCGGGCGCTGTACGTGGAGGACAATATCGAACTGCGCCCCGGCACCATGCTCACC
CCCGGGCTGCGCCTGGACGATCACAGCGACTTCGGCCTGAACTGGAGCCCGAGCCTGAACGCTTCCCAGACG
CTCGGCGAATACTTCACGGTCAAGGCCGGTATCGCACGGGCCTTCAAGGCGCCCAACCTGTACCAGAGCAAC
CCGAACTACCTGCTCTATACCCGTGGCAACGGCTGCCCGATCCAGACCAGCAGCGGCGGCTGCTACCTGGTC
GGCAACGAGAACCTGGACGCCGAGACCAGCGTCAACAAGGAACTGGGCATCGAGTTCCGGCGCGATGGCTGG
GTCGCCGGGCTCACCTATTTCCGCAACGACTACAAGAACAAGATCGTCGCGCCGCTGGATGTCATGGGACAG
ACCGGGACCGGTAACAACATCCTGCAATGGAGCAACGCGAAGAAAGCAGTGGTCGAGGGCCTGGAAGGCAAC
CTGCTGGTCCCCCTGCACGAGGACCTTAGCTGGAGCACCAACCTGACCTATATGCTGCAATCCAAGGACAAG
GACACCGGCAACCCGCTTTCGGTGATCCCCGAGTACACCCTGAACTCGACCCTGGACTGGCAGGCCAGCGAG
CGTCTTTCCACCCAACTGACCAGCACCATCTACGGCCGCCAGGAGCCGCCGAAGCATGGCACCAGCCGCAAC
ACGCCGGTGGTCTCGCGAAAAGAGGTGGGTACCTATGGCATCTGGGGCGTCAGCGCCGGCTACACCTTCAGC
GAGAACCTGAGCGTACGGGGCGGGGTAAGCAACCTCTTCGACAAGCGCCTGTACCGCCAGGGCAACTCCTTC
GACGCCGGTGCGGCAACCTACAACGAGCCGGGTCGCGCCTACTACGTTTCGATGACCACCTCGTTCTGA
Translation:
MYPQFRRGHLAAAVLFASSSLLGGQALAEDERLEELDERAESVVQLGDEVVLGTAEQELKQAPGVSIITAED
IRKRPPVNDLSEIIRTMPGVNLTGNSSSGQRGNNRQIDIRGMGPENTLILVDGKPVSSRNSVRYGWRGERDT
RGDSNWVPPEEVERIEVLRGPAAARYGSGAAGGVVNIITKRPTDRLRGSMTVFTNIPESSKDGATRRANFSL
SGPLTEALSFRAYGSANKTDSDDTDINLGHTVNPSRTVAGREGVRNRDLSGMLSWQVTPDQVVDFEAGFSRQ
GNIYAGDTQNNNGTANTQGLADDGAETNRMYRENYAITHNGTWSFGTSRFVAQYDSTRNNRLEEGLAGSVEG
QIGADRSFSTSKLENYRLSGELNLPLHALFEQVLTVGAEWNKETLNDPSSLKQGFVGSDSLPGTPAAGSRSP
KSKAEIRALYVEDNIELRPGTMLTPGLRLDDHSDFGLNWSPSLNASQTLGEYFTVKAGIARAFKAPNLYQSN
PNYLLYTRGNGCPIQTSSGGCYLVGNENLDAETSVNKELGIEFRRDGWVAGLTYFRNDYKNKIVAPLDVMGQ
TGTGNNILQWSNAKKAVVEGLEGNLLVPLHEDLSWSTNLTYMLQSKDKDTGNPLSVIPEYTLNSTLDWQASE
RLSTQLTSTIYGRQEPPKHGTSRNTPVVSRKEVGTYGIWGVSAGYTFSENLSVRGGVSNLFDKRLYRQGNSF
DAGAATYNEPGRAYYVSMTTSF*
AnnotationID:244GeneID:234
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 17:05:12
Gene Name:
Confidence Code:2
GeneProduct:siderophore receptor protein
Cell Localization:(6) Outer membrane protein
Synonyms:PA0931, pirA
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4771, pfam00593
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins. Score: 818, 0.0
pfam00593, TonB_dep_Rec, TonB dependent receptor. Score: 322, 1e-88






   
Genomic Context:
pirRSA (Pseudomonas aeruginosa) 






   
Comment:


















    ReferenceID:471




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17613




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:234
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
398
                           PA0931_tr
                           translation of PA0931
                           742
                           99.86
                           99.86
                           0
                           3852.0
     

     
     
22799
                           gb|AAG04320.1|AE004527_7
                           (AE004527) siderophore receptor protein [Pseudomonas aeruginosa PAO1]
                           742
                           99.86
                           99.86
                           0
                           3852.0
     

     
     
22800
                           gb|AAC06224.1|
                           (AF051692) phenolate-type ferrisiderophore receptor [Pseudomonas aeruginosa]
                           742
                           99.19
                           99.19
                           0
                           3819.0
     

     
     
399
                           PA2688_tr
                           translation of PA2688
                           765
                           59.21
                           70.84
                           42
                           2199.0
     

     
     
22812
                           gb|AAA25928.1|
                           (M98033) ferric enterobactin receptor [Pseudomonas aeruginosa]
                           765
                           59.21
                           70.84
                           42
                           2199.0
     

     






      

          
GC ORFID: 43236How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0931Glimmer Score: 

          
Start: 320580Stop: 322808

          
Length: 2229


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0931 translation of PA0931Homolog Bit Score 1488.0

          
Other Homologs:  t_PA2688 (ORF: BLASTX 841.0), t_PA0931 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACCCCCAATTCCGTCGCGGCCATCTCGCCGCTGCCGTCCTTTTCGCTTCATCGAGCCTGCTGGGCGGG 
CAGGCCCTGGCCGAGGACGAGCGCCTGGAAGAACTGGACGAACGCGCCGAGTCGGTGGTCCAGCTGGGTGAC 
GAGGTGGTGCTGGGCACCGCCGAACAGGAGCTCAAGCAGGCACCGGGGGTATCCATCATCACCGCCGAGGAC 
ATCAGGAAGCGCCCGCCGGTGAACGATCTCTCCGAGATCATCCGCACCATGCCCGGGGTCAACCTCACCGGC 
AACAGTTCCAGCGGCCAGCGCGGCAACAACCGGCAGATCGACATCCGCGGCATGGGGCCGGAGAACACCCTG 
ATCCTGGTCGATGGCAAGCCGGTCAGCTCGCGCAACTCGGTGCGCTACGGCTGGCGTGGCGAACGCGACACC 
CGCGGCGACAGCAACTGGGTGCCGCCGGAGGAGGTCGAGCGCATCGAGGTCCTCCGTGGGCCCGCGGCGGCA 
CGCTACGGTTCCGGCGCGGCGGGCGGGGTAGTCAACATCATCACCAAGCGCCCGACCGATCGTTTGCGTGGC 
TCCATGACGGTGTTCACCAACATTCCGGAAAGCTCCAAGGATGGCGCCACGCGCCGCGCCAACTTCAGCCTC 
AGCGGGCCGCTGACCGAAGCCTTGAGCTTCCGCGCGTACGGCAGCGCGAACAAGACCGATTCGGACGATACC 
GACATCAACCTCGGACATACCGTCAACCCGAGCCGTACCGTGGCCGGACGCGAAGGGGTACGCAATCGCGAT 
CTCAGCGGGATGCTGTCGTGGCAGGTGACCCCCGACCAGGTCGTCGATTTCGAAGCGGGCTTCAGCCGACAG 
GGCAACATCTATGCCGGCGATACCCAGAACAACAACGGCACCGCCAATACCCAGGGACTCGCCGACGACGGT 
GCGGAGACCAACCGCATGTATCGCGAGAACTACGCCATCACCCACAACGGGACCTGGTCGTTCGGTACTTCC 
AGGTTCGTCGCCCAGTACGACTCCACCCGCAACAACCGTCTGGAGGAGGGGCTGGCCGGTTCCGTCGAGGGG 
CAGATCGGCGCCGACCGTTCGTTCAGCACCAGCAAGCTGGAGAACTATCGCCTCAGCGGCGAACTCAACCTT 
CCGTTGCATGCGTTGTTCGAGCAGGTGCTGACGGTGGGCGCGGAGTGGAACAAGGAAACCCTCAACGACCCG 
TCCTCGCTCAAGCAGGGCTTCGTGGGAAGCGATAGCTTGCCGGGGACCCCCGCGGCCGGCTCGCGAAGCCCG 
AAAAGCAAGGCGGAGATCCGGGCGCTGTACGTGGAGGACAATATCGAACTGCGCCCCGGCACCATGCTCACC 
CCCGGGCTGCGCCTGGACGATCACAGCGACTTCGGCCTGAACTGGAGCCCGAGCCTGAACGCTTCCCAGACG 
CTCGGCGAATACTTCACGGTCAAGGCCGGTATCGCACGGGCCTTCAAGGCGCCCAACCTGTACCAGAGCAAC 
CCGAACTACCTGCTCTATACCCGTGGCAACGGCTGCCCGATCCAGACCAGCAGCGGCGGCTGCTACCTGGTC 
GGCAACGAGAACCTGGACGCCGAGACCAGCGTCAACAAGGAACTGGGCATCGAGTTCCGGCGCGATGGCTGG 
GTCGCCGGGCTCACCTATTTCCGCAACGACTACAAGAACAAGATCGTCGCGCCGCTGGATGTCATGGGACAG 
ACCGGGACCGGTAACAACATCCTGCAATGGAGCAACGCGAAGAAAGCAGTGGTCGAGGGCCTGGAAGGCAAC 
CTGCTGGTCCCCCTGCACGAGGACCTTAGCTGGAGCACCAACCTGACCTATATGCTGCAATCCAAGGACAAG 
GACACCGGCAACCCGCTTTCGGTGATCCCCGAGTACACCCTGAACTCGACCCTGGACTGGCAGGCCAGCGAG 
CGTCTTTCCACCCAACTGACCAGCACCATCTACGGCCGCCAGGAGCCGCCGAAGCATGGCACCAGCCGCAAC 
ACGCCGGTGGTCTCGCGAAAAGAGGTGGGTACCTATGGCATCTGGGGCGTCAGCGCCGGCTACACCTTCAGC 
GAGAACCTGAGCGTACGGGGCGGGGTAAGCAACCTCTTCGACAAGCGCCTGTACCGCCAGGGCAACTCCTTC 
GACGCCGGTGCGGCAACCTACAACGAGCCGGGTCGCGCCTACTACGTTTCGATGACCACCTCGTTCTGA