ViewGene
Locus Name:
GeneID:
Location:

GeneID:2339
TrivialName: PA14_32970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32970
PAO1 Ortholog Locus:PA2447
Sequence Length:924
Protein Length:307
Start: 2884539
Stop: 2885462
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05835.1|AE004672_3 (AE004672) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 307/307 (100%), Positives = 307/307 (100%)
Sequence:
ATGGACAAATTGAATGCCCTGGCGATGTTCGTCGCCACTGCCGAAACCGGTAGCTTCAGCCGTGGCGCCGAG
CGCCTGGGCAAGACGCCCTCGGCGCTGACCAAGGCCGTCGCCCACCTGGAAGCGGAACTCGGTGCCCGCCTG
TTCGAGCGCACCACCCGCAGCCTGGCGCTGACCGAGGCCGGGCAGATCTACCTGGAGGCGGCCCGCCAGTCC
CTGGAAACGCTGCGCACGGCGGGGCAGGAGATCGAACTGCTGGAGTCGGAGTTGCGCGGCGAACTGCGTCTC
GCCGCGCCGCCGTCGTTCGCCGCGGCGTTCCTCCAGCAGGCCTGCGCCAGCTTCCTCGAGGCGCATCCGCGG
ATCAGCCTGCGGGTGGACCTCGACGAAACCTTCCTCGATCTCAGCGAAGGCGGCTACGACCTCGGCCTGCGC
GACGGCCCCATCGACCTGCCGGGGCTGGTGGCGCGGCCGCTGGCGCCGAACCAGATCGTGCTTTGCGCCAGC
CCCGCCTACCTGGCGCGGCAACCCGCGCCGCAAGGCCCGGAGGACTTCGAGCGGCACGCCTGGCTGGTCTTC
CAGCACCCTTCGCTGAACCAGAACTTCTGGTGGATGGAACGCGACGGCGCCCGCCAGCGTATCGACCAGCCG
CGCCCGCGACTGGCCAGCGACAACTACGACTTCCTGCTCGCCCACCTGCTGGCCGGGCTGGGCCTGCAGTTC
TGTCCGCAGTGGAGTGTCGCGCCGCTGCTCGGCGAAGGGCGGTTGGTGCGCCTGCTCGGCGACTACCACTTC
GACCCGGGGCCGTTCGGGCCCTCCATCCATGTCCTCTATCCGGGGCACCGGCGCAACACGCGGAAGGTCCGC
GCGTTCCTCGAGCACCTGCGCGCCAGCTTGCAGCGACAGGGGCTGTGCCATCGGCTGTAA
Translation:
MDKLNALAMFVATAETGSFSRGAERLGKTPSALTKAVAHLEAELGARLFERTTRSLALTEAGQIYLEAARQS
LETLRTAGQEIELLESELRGELRLAAPPSFAAAFLQQACASFLEAHPRISLRVDLDETFLDLSEGGYDLGLR
DGPIDLPGLVARPLAPNQIVLCASPAYLARQPAPQGPEDFERHAWLVFQHPSLNQNFWWMERDGARQRIDQP
RPRLASDNYDFLLAHLLAGLGLQFCPQWSVAPLLGEGRLVRLLGDYHFDPGPFGPSIHVLYPGHRRNTRKVR
AFLEHLRASLQRQGLCHRL*
AnnotationID:2347GeneID:2339
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:38
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA2447
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2447,  51% similar to hypothetical protein [Haemophilus influenzae].






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4681




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21827




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2339
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3976
                           PA2447_tr
                           translation of PA2447
                           307
                           99.99
                           99.99
                           0
                           1597.0
     

     
     
120603
                           gb|AAG05835.1|AE004672_3
                           (AE004672) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           307
                           99.99
                           99.99
                           0
                           1597.0
     

     
     
120604
                           gb|AAQ61143.1|
                           (AE016922) probable transcriptional regulator, LysR family [Chromobacterium violaceum ATCC 12472]
                           327
                           38.22
                           51.07
                           32
                           480.0
     

     






      

          
GC ORFID: 45341How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2447Glimmer Score: 

          
Start: 2069385Stop: 2068462

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2447 translation of PA2447Homolog Bit Score 619.0

          
Other Homologs:  t_PA2447 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAATTGAATGCCCTGGCGATGTTCGTCGCCACTGCCGAAACCGGTAGCTTCAGCCGTGGCGCCGAG 
CGCCTGGGCAAGACGCCCTCGGCGCTGACCAAGGCCGTCGCCCACCTGGAAGCGGAACTCGGTGCCCGCCTG 
TTCGAGCGCACCACCCGCAGCCTGGCGCTGACCGAGGCCGGGCAGATCTACCTGGAGGCGGCCCGCCAGTCC 
CTGGAAACGCTGCGCACGGCGGGGCAGGAGATCGAACTGCTGGAGTCGGAGTTGCGCGGCGAACTGCGTCTC 
GCCGCGCCGCCGTCGTTCGCCGCGGCGTTCCTCCAGCAGGCCTGCGCCAGCTTCCTCGAGGCGCATCCGCGG 
ATCAGCCTGCGGGTGGACCTCGACGAAACCTTCCTCGATCTCAGCGAAGGCGGCTACGACCTCGGCCTGCGC 
GACGGCCCCATCGACCTGCCGGGGCTGGTGGCGCGGCCGCTGGCGCCGAACCAGATCGTGCTTTGCGCCAGC 
CCCGCCTACCTGGCGCGGCAACCCGCGCCGCAAGGCCCGGAGGACTTCGAGCGGCACGCCTGGCTGGTCTTC 
CAGCACCCTTCGCTGAACCAGAACTTCTGGTGGATGGAACGCGACGGCGCCCGCCAGCGTATCGACCAGCCG 
CGCCCGCGACTGGCCAGCGACAACTACGACTTCCTGCTCGCCCACCTGCTGGCCGGGCTGGGCCTGCAGTTC 
TGTCCGCAGTGGAGTGTCGCGCCGCTGCTCGGCGAAGGGCGGTTGGTGCGCCTGCTCGGCGACTACCACTTC 
GACCCGGGGCCGTTCGGGCCCTCCATCCATGTCCTCTATCCGGGGCACCGGCGCAACACGCGGAAGGTCCGC 
GCGTTCCTCGAGCACCTGCGCGCCAGCTTGCAGCGACAGGGGCTGTGCCATCGGCTGTAA