ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2338

TrivialName: PA14_46400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_46400

PAO1 Ortholog Locus: PA1380

Sequence Length: 966

Protein Length: 321

Start: 4129094

Stop: 4128129

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04769.1|AE004567_8 (AE004567) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 317/321 (98%), Positives = 317/321 (98%)

Sequence:

ATGAGCGCATCACCGCCTGATTCAGAAGCCATCCGCTCCGCCGACCGACAGCGCATGGTCGCGTTGCTTGAA
AACCTGGCGCCCCAGGAGGGCTACAACCTCACCGGGCTCGACAGCGTCCGCCTGCTGCGTTCGGATCGTCCG
CTGGCGCGGACGCCGGTGCTCTACGATCCGGGGATCGTCATCGTTTGCCAGGGGCGAAAGCGCGGCTATTTC
GGCGAGCAGATCTACCTGTACGACGAGCAGCACTACCTGGCCGTGGCGGTGCCGGTGCCGTTCACCATGGAG
ACCGATGCCACGCCAGAGCGACCGCTGCTGGCGATCTACCTGCACCTGGATTTCCCGCTGGCGGCCGGGCTG
GCGGTGGAGATCGACCGTCAGCGCGCGCTTGCGCAGGTCGAAGCGCCACGCAGTCTGATGTCCAGCCCTATG
GACGCGCCGCTGCGGGCATCGGTGTTGCGCTTCCTGGAGGCGCTGGGCGATCCGCTGGAGACAGCGATCCTC
GCGCCTGCGCTACTGCGCGAGCTGTACTTCCGCGTGCTCACCGGCCCTCAGGGCGGCGCCATGCGCGCGGCA
CTGGCCATGCGCGGGCGCTTCGGCAACATTGCCCGGGCGCTGCGCCGCATCCACGCGCAATACGCCGAGCCG
CTCGAGCTGGCGCAACTGGCGGGCGAGGCGGGGATGAGCGTGCCGTCGTTCCACAGCCACTTCAAGGCGATC
ACCCAGACCTCGCCGATGCAGTACCTGAAGTGCACACGCCTGCATCAGGCGCGTCTGCTGATGGTGCGCCAG
GGCATGAGCGCCCAGGCCGCCTGCCATGCGGTCGGCTACGCCAGCGCTTCGCAGTTCAACCGCGAGTTCAAG
CGTCTGTTCGGCCGCTCGCCGCTGGCAGAAGCCCGGCGCCTGCGCGCGGGGTTCTCGCTGCCGCCGGCGCAG
GGGGGAGAGGAGTACGTGTCGTCGCATTAG

Translation:

MSASPPDSEAIRSADRQRMVALLENLAPQEGYNLTGLDSVRLLRSDRPLARTPVLYDPGIVIVCQGRKRGYF
GEQIYLYDEQHYLAVAVPVPFTMETDATPERPLLAIYLHLDFPLAAGLAVEIDRQRALAQVEAPRSLMSSPM
DAPLRASVLRFLEALGDPLETAILAPALLRELYFRVLTGPQGGAMRAALAMRGRFGNIARALRRIHAQYAEP
LELAQLAGEAGMSVPSFHSHFKAITQTSPMQYLKCTRLHQARLLMVRQGMSAQAACHAVGYASASQFNREFK
RLFGRSPLAEARRLRAGFSLPPAQGGEEYVSSH*

AnnotationID:2346 GeneID:2338

AnnotatorUID: diggins

Modification Date/Time: 2005-02-23 21:09:55

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: yqhC

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam06719,smart00342

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAP18345.1| (AE016988) putative ARAC-type regulatory protein [Shigella flexneri
           2a str. 2457T]
          Length = 375

 Score =  227 bits (579), Expect = 6e-59
 Identities = 118/268 (44%), Positives = 167/268 (62%)

>gb|AAN82188.1|AE016766_276 (AE016766) Hypothetical transcriptional regulator yqhC [Escherichia
           coli CFT073]
          Length = 375

 Score =  227 bits (579), Expect = 6e-59
 Identities = 118/268 (44%), Positives = 167/268 (62%)

Structural Features:

pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus.
CD-Length = 156 residues, 100.0% aligned
Score =  174 bits (442), Expect = 1e-44
Identities = 74/156 (47%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  95.2% aligned
Score = 77.9 bits (192), Expect = 1e-15
Identities = 33/80 (41%), Positives = 44/80 (55%)

Genomic Context:

Comment:

ReferenceID:4679

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21825

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37402

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2338_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2338

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3974 PA1380_tr translation of PA1380 321 98.75 98.75 0 1596.0

120587 gb|AAG04769.1|AE004567_8 (AE004567) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 321 98.75 98.75 0 1596.0

3975 PA2276_tr translation of PA2276 339 38.93 54.86 61 603.0

120588 gb|AAG05664.1|AE004653_7 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 339 38.93 54.86 61 603.0

120596 gb|AAO59961.1| (AF543479) UqhC [uncultured bacterium] 325 38.15 54.15 24 563.0

GC ORFID: `45340`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1380`	Glimmer Score:
Start: `824815`	Stop: `825780`
Length: `966`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA1380 translation of PA1380`	Homolog Bit Score `619.0`
Other Homologs: `t_PA2276 (ORF: BLASTX 233.0), t_PA1380 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGCATCACCGCCTGATTCAGAAGCCATCCGCTCCGCCGACCGACAGCGCATGGTCGCGTTGCTTGAA AACCTGGCGCCCCAGGAGGGCTACAACCTCACCGGGCTCGACAGCGTCCGCCTGCTGCGTTCGGATCGTCCG CTGGCGCGGACGCCGGTGCTCTACGATCCGGGGATCGTCATCGTTTGCCAGGGGCGAAAGCGCGGCTATTTC GGCGAGCAGATCTACCTGTACGACGAGCAGCACTACCTGGCCGTGGCGGTGCCGGTGCCGTTCACCATGGAG ACCGATGCCACGCCAGAGCGACCGCTGCTGGCGATCTACCTGCACCTGGATTTCCCGCTGGCGGCCGGGCTG GCGGTGGAGATCGACCGTCAGCGCGCGCTTGCGCAGGTCGAAGCGCCACGCAGTCTGATGTCCAGCCCTATG GACGCGCCGCTGCGGGCATCGGTGTTGCGCTTCCTGGAGGCGCTGGGCGATCCGCTGGAGACAGCGATCCTC GCGCCTGCGCTACTGCGCGAGCTGTACTTCCGCGTGCTCACCGGCCCTCAGGGCGGCGCCATGCGCGCGGCA CTGGCCATGCGCGGGCGCTTCGGCAACATTGCCCGGGCGCTGCGCCGCATCCACGCGCAATACGCCGAGCCG CTCGAGCTGGCGCAACTGGCGGGCGAGGCGGGGATGAGCGTGCCGTCGTTCCACAGCCACTTCAAGGCGATC ACCCAGACCTCGCCGATGCAGTACCTGAAGTGCACACGCCTGCATCAGGCGCGTCTGCTGATGGTGCGCCAG GGCATGAGCGCCCAGGCCGCCTGCCATGCGGTCGGCTACGCCAGCGCTTCGCAGTTCAACCGCGAGTTCAAG CGTCTGTTCGGCCGCTCGCCGCTGGCAGAAGCCCGGCGCCTGCGCGCGGGGTTCTCGCTGCCGCCGGCGCAG GGGGGAGAGGAGTACGTGTCGTCGCATTAG