ViewGene
Locus Name:
GeneID:
Location:

GeneID:2337
TrivialName: PA14_52930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52930
PAO1 Ortholog Locus:PA0876
Sequence Length:945
Protein Length:314
Start: 4693185
Stop: 4692241
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04265.1|AE004522_7 (AE004522) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 312/314 (99%), Positives = 313/314 (99%)
Sequence:
ATGGATATCCTGTTCAATATGCGCGCGTTCGTCAGCGTCGCGGAGACCGGCAGTTTCACTGCCGCCGCCCAG
CGCCTGGACCTGACGACCGCCTATGTCTCCCGTGCGGTGGCCAAGCTGGAGGCCCACCTGCAGACCCGCCTG
CTGCATCGCACCACCCGGCGCATCGCCCTGACCGAAGCCGGGCAGCGCTACCTGATGCGCGCCCAGCAGATA
CTCGCCTACATCGAGGAGGCCGAGGCCGAGGCGGGCGACGCCCATGCGCGGCCGTCGGGCACGCTGAAGGTC
CACGCGATGACCGGCATCGGCCAGCACTACCTGATCAAGGCCATCTCGCAATACTGCGAGACCTACCCGGAG
GTTGGCTTCGACCTGACCCTGGCCAACCGGATCACCGACATTCTCGACGAGGGCTACGACATTTCCGTGGTG
ATCGCCCCCGAACTGCCGGACTCCGGTTTCGTCTCCAAGTGCATCGGCCAGACCTACAGCATCCTCTGCGCC
TCGCCGGGCTACATTGCCGCGCACGGCTTCCCCAGGCTGCCGGCGGAGCTGTCCGCGCACCGTTGCCTGCGC
CTGGTGAACTCGGTGATGTCGCTGGACCGCTGGCTGTTCGACGGGCCCGACGGCCAGGAACTGGCCTGCATC
AACCAGACGCATTTCCAGGTCAACACCGCCGACGCCATGACCGAGGCGGTGGTCTCCGGCATGGGTATCGGC
GCGCTGCCGGTGTACGCGGCGGTCAACGGCCTGAAGGACGGCAGCCTGGTGCGGGTGTTGCCGCGCTATAGC
CTGTTCCATCTCAACGTCTACGCCCTCTACCCCTCGCGGCAGTACCTGGATGCAAAGATCCGCACCTGGGTC
GAGTTCCTCCGCGAGCACATGCCGGCGATGCTCGCCGCGGACGAGCGCAGCCTGGCGGAGAGCGGTGGGTTG
GCGAACTGA
Translation:
MDILFNMRAFVSVAETGSFTAAAQRLDLTTAYVSRAVAKLEAHLQTRLLHRTTRRIALTEAGQRYLMRAQQI
LAYIEEAEAEAGDAHARPSGTLKVHAMTGIGQHYLIKAISQYCETYPEVGFDLTLANRITDILDEGYDISVV
IAPELPDSGFVSKCIGQTYSILCASPGYIAAHGFPRLPAELSAHRCLRLVNSVMSLDRWLFDGPDGQELACI
NQTHFQVNTADAMTEAVVSGMGIGALPVYAAVNGLKDGSLVRVLPRYSLFHLNVYALYPSRQYLDAKIRTWV
EFLREHMPAMLAADERSLAESGGLAN*
AnnotationID:2345GeneID:2337
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 13:01:22
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0876
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]. Score: 160, 5e-40
pfam03466, LysR_substrate, LysR substrate binding domain. Score: 103, 7e-23






   
Genomic Context:






   
Comment:


















    ReferenceID:4677




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21823




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2337
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3970
                           PA0876_tr
                           translation of PA0876
                           314
                           99.36
                           99.68
                           0
                           1597.0
     

     
     
120580
                           gb|AAG04265.1|AE004522_7
                           (AE004522) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           314
                           99.36
                           99.68
                           0
                           1597.0
     

     
     
120581
                           gb|AAG07282.1|AE004807_1
                           (AE004807) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           317
                           66.87
                           82.96
                           3
                           1107.0
     

     
     
3971
                           PA3895_tr
                           translation of PA3895
                           317
                           66.87
                           82.96
                           3
                           1107.0
     

     
     
120582
                           gb|AAN66886.1|AE016317_3
                           (AE016778) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           315
                           66.66
                           81.58
                           1
                           1096.0
     

     






      

          
GC ORFID: 45339How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0876Glimmer Score: 

          
Start: 260722Stop: 261666

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0876 translation of PA0876Homolog Bit Score 619.0

          
Other Homologs:  t_PA3895 (ORF: BLASTX 433.0), t_PA0159 (ORF: BLASTX 298.0), t_PA2838 (ORF: BLASTX 243.0), t_PA0876 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATATCCTGTTCAATATGCGCGCGTTCGTCAGCGTCGCGGAGACCGGCAGTTTCACTGCCGCCGCCCAG 
CGCCTGGACCTGACGACCGCCTATGTCTCCCGTGCGGTGGCCAAGCTGGAGGCCCACCTGCAGACCCGCCTG 
CTGCATCGCACCACCCGGCGCATCGCCCTGACCGAAGCCGGGCAGCGCTACCTGATGCGCGCCCAGCAGATA 
CTCGCCTACATCGAGGAGGCCGAGGCCGAGGCGGGCGACGCCCATGCGCGGCCGTCGGGCACGCTGAAGGTC 
CACGCGATGACCGGCATCGGCCAGCACTACCTGATCAAGGCCATCTCGCAATACTGCGAGACCTACCCGGAG 
GTTGGCTTCGACCTGACCCTGGCCAACCGGATCACCGACATTCTCGACGAGGGCTACGACATTTCCGTGGTG 
ATCGCCCCCGAACTGCCGGACTCCGGTTTCGTCTCCAAGTGCATCGGCCAGACCTACAGCATCCTCTGCGCC 
TCGCCGGGCTACATTGCCGCGCACGGCTTCCCCAGGCTGCCGGCGGAGCTGTCCGCGCACCGTTGCCTGCGC 
CTGGTGAACTCGGTGATGTCGCTGGACCGCTGGCTGTTCGACGGGCCCGACGGCCAGGAACTGGCCTGCATC 
AACCAGACGCATTTCCAGGTCAACACCGCCGACGCCATGACCGAGGCGGTGGTCTCCGGCATGGGTATCGGC 
GCGCTGCCGGTGTACGCGGCGGTCAACGGCCTGAAGGACGGCAGCCTGGTGCGGGTGTTGCCGCGCTATAGC 
CTGTTCCATCTCAACGTCTACGCCCTCTACCCCTCGCGGCAGTACCTGGATGCAAAGATCCGCACCTGGGTC 
GAGTTCCTCCGCGAGCACATGCCGGCGATGCTCGCCGCGGACGAGCGCAGCCTGGCGGAGAGCGGTGGGTTG 
GCGAACTGA