ViewGene
Locus Name:
GeneID:
Location:

GeneID:2336
TrivialName: PA14_66020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66020
PAO1 Ortholog Locus:PA4993
Sequence Length:921
Protein Length:306
Start: 5880046
Stop: 5880966
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08378.1|AE004912_4 (AE004912) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 306/306 (100%), Positives = 306/306 (100%)
Sequence:
ATGCCCCGTATGCTCGCCCGCAAGGATCCGTCCGCCTTCAAGACCCTGCCGCTGCTGGTGGAGGCCTCCCCG
GACGGGCTGGTCTACCAGGCCCTCGGCCTGCCGCTGAACTTCCAGCAGATGCTCGTACGCCGCCGCCGCATG
GAGGTAGCCGACCCGCAGCGCTTCGTCGCCGAGCTGGCCAACCTGGGGGTCTCGGTGCGCTTGACCCTGAAC
TGGCAGGGCCGCGACTACTGGGTGCTGGTCCGTCAGCGCCGGCTGGACCGCGGCGATACCGTGCTCAAGCTG
ATCTCCGGCTACGTACCGGCCCACGAACTGAACCTGCCGCTGCTCACGGCGATCCAGGAAGTCGCCGAGGAA
TGCCTGGTGGAGACCGCCGGCGGCTGGCTCGGCGGGCGCTTCGGCGACACCTGGCTGCCGACGCCCTACCAG
GGTTCGCTGCGCTACCGGGAGAACAGCCACTTCGTCCTCACCCCGCTGTCCGGCGCCGCCCGTCCGGTGCAA
GCCGGCAGCCTGCGCTTGCTGGAGCGCCCACGCGCCTACGTACACCTGCCCACGGCCTCGCTGCAACTGGTC
TACGACATGCGCCTGGAGCTGCCGCGCGATGCGCGCGAGCCGAGCCTCTACCATGTCGACGAGCGGCTCGAG
AGCGGTCCGCTGGTGGCGCGTCTGGACCGTCGGCGCCCCGATCTCTACCTGCTGCCGCTGGACCAAGGGCGC
CCCACCGGCGACCTGTTCACCCTGCGCAAGGGCCAGTTGCGCCCTGCGGCCACCCGCGGCCTGTGGTTGGCC
GAGAGCTTTGCCGTACAGGACGGCTGGCTGGTGCATGAGGAACGCATCCGTTTCCGCGACTGGCTGGCACTG
TGGCCATCCAGCAACGGCGACCAGGCCGGCGGTGGGCGCGACCGCGCCAGCGCCTGA
Translation:
MPRMLARKDPSAFKTLPLLVEASPDGLVYQALGLPLNFQQMLVRRRRMEVADPQRFVAELANLGVSVRLTLN
WQGRDYWVLVRQRRLDRGDTVLKLISGYVPAHELNLPLLTAIQEVAEECLVETAGGWLGGRFGDTWLPTPYQ
GSLRYRENSHFVLTPLSGAARPVQAGSLRLLERPRAYVHLPTASLQLVYDMRLELPRDAREPSLYHVDERLE
SGPLVARLDRRRPDLYLLPLDQGRPTGDLFTLRKGQLRPAATRGLWLAESFAVQDGWLVHEERIRFRDWLAL
WPSSNGDQAGGGRDRASA*
AnnotationID:2344GeneID:2336
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 08:08:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4993
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4675




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21821




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2336
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3969
                           PA4993_tr
                           translation of PA4993
                           306
                           99.99
                           99.99
                           0
                           1599.0
     

     
     
120577
                           gb|AAG08378.1|AE004912_4
                           (AE004912) hypothetical protein PA4993 [Pseudomonas aeruginosa PAO1]
                           306
                           99.99
                           99.99
                           0
                           1599.0
     

     
     
120578
                           gb|AAN70500.1|AE016691_8
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           322
                           64.59
                           77.32
                           16
                           1079.0
     

     
     
120579
                           gb|AAO58410.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           318
                           63.83
                           77.35
                           12
                           1057.0
     

     






      

          
GC ORFID: 45338How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4993Glimmer Score: 

          
Start: 5143729Stop: 5144649

          
Length: 921


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4993 translation of PA4993Homolog Bit Score 620.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3678 (ORF: BLASTX 416.0), t_PA4993 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGTATGCTCGCCCGCAAGGATCCGTCCGCCTTCAAGACCCTGCCGCTGCTGGTGGAGGCCTCCCCG 
GACGGGCTGGTCTACCAGGCCCTCGGCCTGCCGCTGAACTTCCAGCAGATGCTCGTACGCCGCCGCCGCATG 
GAGGTAGCCGACCCGCAGCGCTTCGTCGCCGAGCTGGCCAACCTGGGGGTCTCGGTGCGCTTGACCCTGAAC 
TGGCAGGGCCGCGACTACTGGGTGCTGGTCCGTCAGCGCCGGCTGGACCGCGGCGATACCGTGCTCAAGCTG 
ATCTCCGGCTACGTACCGGCCCACGAACTGAACCTGCCGCTGCTCACGGCGATCCAGGAAGTCGCCGAGGAA 
TGCCTGGTGGAGACCGCCGGCGGCTGGCTCGGCGGGCGCTTCGGCGACACCTGGCTGCCGACGCCCTACCAG 
GGTTCGCTGCGCTACCGGGAGAACAGCCACTTCGTCCTCACCCCGCTGTCCGGCGCCGCCCGTCCGGTGCAA 
GCCGGCAGCCTGCGCTTGCTGGAGCGCCCACGCGCCTACGTACACCTGCCCACGGCCTCGCTGCAACTGGTC 
TACGACATGCGCCTGGAGCTGCCGCGCGATGCGCGCGAGCCGAGCCTCTACCATGTCGACGAGCGGCTCGAG 
AGCGGTCCGCTGGTGGCGCGTCTGGACCGTCGGCGCCCCGATCTCTACCTGCTGCCGCTGGACCAAGGGCGC 
CCCACCGGCGACCTGTTCACCCTGCGCAAGGGCCAGTTGCGCCCTGCGGCCACCCGCGGCCTGTGGTTGGCC 
GAGAGCTTTGCCGTACAGGACGGCTGGCTGGTGCATGAGGAACGCATCCGTTTCCGCGACTGGCTGGCACTG 
TGGCCATCCAGCAACGGCGACCAGGCCGGCGGTGGGCGCGACCGCGCCAGCGCCTGA