ViewGene
Locus Name:
GeneID:
Location:

GeneID:2335
TrivialName: PA14_58440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58440
PAO1 Ortholog Locus:PA4503
Sequence Length:1011
Protein Length:336
Start: 5205656
Stop: 5206666
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07891.1|AE004864_3 (AE004864) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 313/336 (93%), Positives = 326/336 (97%)
Sequence:
ATGCTTAGTTTCATTGCACGACGATTGGGGTTGCTGATCCCCACCTTCTTCGGCGTGACGCTGCTCACCTTC
GCGCTGATCCGCCTGATTCCCGGCGACCCGGTGGAAGTGATGATGGGCGAACGTCGCGTCGATCCGCAGATG
CATGCCGAGGCCCTGCACCGCCTGGGCCTGGACAAGCCCTTGTACCAGCAGTACCTGGACTACGTGGGCAAC
CTGGCACAGGGCAATCTCGGCGAGTCGCTGACCACCCGCGAAGGCGTCTGGCACGAATTCCTCACCCTGTTC
CCGGCGACCCTGGAACTGTCCCTGGCCGCCATGCTCTTCGCCGGTACCTTCGGCCTGCTGGCCGGGGTGATC
GCCGCCCTGAAACGCGGTTCGCTGTTCGACCATGGGGTGATGACGGTGTCCCTCGCCGGCTATTCGATGCCG
ATCTTCTGGTGGGGCCTGATCCTGATCATGCTGTTCTCCGTGTCGCTGGGCTGGACGCCGGTGTCCGGCCGT
CTCGACCTGCTCTACGACATCGAGCCGAAGACCGGCTTCATGCTGATCGACACCCTGCTTTCCGACGAACAG
GGCTCGTTCCTCGATGCCGTGCGCCACCTGATCCTGCCGGCCATCGTGCTGGGCACCATCCCGCTGGCGGTG
ATCGCCCGCATGACCCGCTCGGCGATGCTCGAGGTGCTGCGCGAAGACTATGTGCGCACCGCCCGCGCCAAG
GGCCTGTCGCCGGCCCGGGTGGTCTTCGTGCACGCCCTGCGCAACGCGCTGATTCCGGTGCTGACGGTATTC
GGCCTGCAGGTCGGCACGCTGCTCGCCGGCGCGGTGCTGACCGAAACCATCTTCTCCTGGCCGGGCATCGGC
AAGTGGCTGATCGACGCCATCAGCCGTCGCGACTACCCGGTGGTGCAGAACGGCATCCTGCTGGTCGCCACC
CTGGTCATCCTGGTCAATTTCGTCGTGGACATCCTCTACGGCCTGGCCAACCCGCGCATTCGCCACCAACGC
TGA
Translation:
MLSFIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLYQQYLDYVGN
LAQGNLGESLTTREGVWHEFLTLFPATLELSLAAMLFAGTFGLLAGVIAALKRGSLFDHGVMTVSLAGYSMP
IFWWGLILIMLFSVSLGWTPVSGRLDLLYDIEPKTGFMLIDTLLSDEQGSFLDAVRHLILPAIVLGTIPLAV
IARMTRSAMLEVLREDYVRTARAKGLSPARVVFVHALRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIG
KWLIDAISRRDYPVVQNGILLVATLVILVNFVVDILYGLANPRIRHQR*
AnnotationID:2343GeneID:2335
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 07:07:47
Gene Name:
Confidence Code:3
GeneProduct:putative dipeptide ABC transport system permease
Cell Localization:()
Synonyms:PA4503
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0601,COG4168
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66506.1|AE016279_9 (AE016777) dipeptide ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 336

 Score =  598 bits (1543), Expect = e-170
 Identities = 302/336 (89%), Positives = 318/336 (94%)


>gb|AAO58010.1| (AE016872) dipeptide ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 336

 Score =  588 bits (1516), Expect = e-167
 Identities = 294/336 (87%), Positives = 314/336 (93%)






 
Structural Features:
COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, 
permease components 
[Amino acid transport and metabolism / 
Inorganic ion transport and metabolism]
CD-Length = 317 residues, 100.0% aligned
Score =  348 bits (894), Expect = 1e-96
Identities = 179/336 (53%), Positives = 224/336 (66%), Gaps = 19/336 (5%)

COG4168, SapB, ABC-type antimicrobial peptide transport system, 
permease component [Defense mechanisms]
CD-Length = 321 residues,  96.9% aligned
Score =  232 bits (594), Expect = 7e-62
Identities = 130/333 (39%), Positives = 191/333 (57%), Gaps = 25/333 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21819




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31546




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2335_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2335
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3968
                           PA4503_tr
                           translation of PA4503
                           336
                           93.15
                           97.02
                           0
                           1598.0
     

     
     
120460
                           gb|AAG07891.1|AE004864_3
                           (AE004864) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           336
                           93.15
                           97.02
                           0
                           1598.0
     

     
     
120461
                           gb|AAN66506.1|AE016279_9
                           (AE016777) dipeptide ABC transporter, permease protein [Pseudomonas putida KT2440]
                           336
                           89.88
                           94.64
                           0
                           1543.0
     

     
     
120462
                           gb|AAO58010.1|
                           (AE016872) dipeptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           336
                           87.50
                           93.45
                           0
                           1516.0
     

     
     
120463
                           gb|AAQ58773.1|
                           (AE016913) dipeptide transport system permease protein [Chromobacterium violaceum ATCC 12472]
                           342
                           80.11
                           89.18
                           6
                           1426.0
     

     






      

          
GC ORFID: 45337How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4503Glimmer Score: 

          
Start: 4469334Stop: 4470344

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4503 translation of PA4503Homolog Bit Score 620.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5616 (ORF: BLASTX 590.0), t_PA4503 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTAGTTTCATTGCACGACGATTGGGGTTGCTGATCCCCACCTTCTTCGGCGTGACGCTGCTCACCTTC 
GCGCTGATCCGCCTGATTCCCGGCGACCCGGTGGAAGTGATGATGGGCGAACGTCGCGTCGATCCGCAGATG 
CATGCCGAGGCCCTGCACCGCCTGGGCCTGGACAAGCCCTTGTACCAGCAGTACCTGGACTACGTGGGCAAC 
CTGGCACAGGGCAATCTCGGCGAGTCGCTGACCACCCGCGAAGGCGTCTGGCACGAATTCCTCACCCTGTTC 
CCGGCGACCCTGGAACTGTCCCTGGCCGCCATGCTCTTCGCCGGTACCTTCGGCCTGCTGGCCGGGGTGATC 
GCCGCCCTGAAACGCGGTTCGCTGTTCGACCATGGGGTGATGACGGTGTCCCTCGCCGGCTATTCGATGCCG 
ATCTTCTGGTGGGGCCTGATCCTGATCATGCTGTTCTCCGTGTCGCTGGGCTGGACGCCGGTGTCCGGCCGT 
CTCGACCTGCTCTACGACATCGAGCCGAAGACCGGCTTCATGCTGATCGACACCCTGCTTTCCGACGAACAG 
GGCTCGTTCCTCGATGCCGTGCGCCACCTGATCCTGCCGGCCATCGTGCTGGGCACCATCCCGCTGGCGGTG 
ATCGCCCGCATGACCCGCTCGGCGATGCTCGAGGTGCTGCGCGAAGACTATGTGCGCACCGCCCGCGCCAAG 
GGCCTGTCGCCGGCCCGGGTGGTCTTCGTGCACGCCCTGCGCAACGCGCTGATTCCGGTGCTGACGGTATTC 
GGCCTGCAGGTCGGCACGCTGCTCGCCGGCGCGGTGCTGACCGAAACCATCTTCTCCTGGCCGGGCATCGGC 
AAGTGGCTGATCGACGCCATCAGCCGTCGCGACTACCCGGTGGTGCAGAACGGCATCCTGCTGGTCGCCACC 
CTGGTCATCCTGGTCAATTTCGTCGTGGACATCCTCTACGGCCTGGCCAACCCGCGCATTCGCCACCAACGC 
TGA