ViewGene
Locus Name:
GeneID:
Location:

GeneID:2333
TrivialName: PA14_11460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11460
PAO1 Ortholog Locus:PA4051
Sequence Length:969
Protein Length:322
Start: 992856
Stop: 993824
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07438.1|AE004821_11 (AE004821) thiamine monophosphate kinase [Pseudomonas aeruginosa PAO1]
Identities = 315/322 (97%), Positives = 318/322 (98%)
Sequence:
ATGGGTGAGTTCGAGCTGATCCGCCGCTTCTTCGCCGCGGCCGCCTGCGCGGCGCCGGCGACGGAGGTGGCC
CTCGGCATCGGCGACGACTGTGCCCTGCTGGCGCCGCCTGCCGGCGAACAGCTGGCGGTCTCCACCGACACC
CTGGTGGAAGGTGTGCATTTTCCCGCCGGTTGCGACCCTTTCCTTCTTGCCCAGCGCGCCCTGGCGGTCTCC
GCCAGCGACCTGGCGGCGATGGGCGCCGCGCCCCTGGCCTTCACCCTGGCCCTGACCTTGCCGAAGGCCGAA
GCCGAGTGGTTGCAGGGCTTCGCCCGCGGCCTCGACGCCATGGCCCGGCAGTGCGGCCTGGCCCTGGTCGGC
GGCGACACCACGCGCGGCCCGCTGAGCATGACCCTGACCGTATTCGGCAGGGTGCCGGCCGGCCAGGCGCTG
ACCCGCGCCGGTGCGCGCCCTGGCGACCTGCTCTGCGTCGGGGGCCCGCTCGGCGAGGCTGGAGCGGCTCTG
GAACTGGTGCTGGAGCGAAGATCGGCGCCCGCCGAGGTGGCCGAACCGCTGCTGGCGCGCTACTGGACGCCG
GCCCCGCAATTCGGTCTAGGCCTCGCCCTGCGCGGCAAGGCCAGCGCCGCCCTGGACATCTCCGACGGGCTG
CTCGCCGATTGCGGGCATATCGCCCGCGCTTCCGGCGTTGCCCTGCTGGTCGAATGCCAGCGCTTGCAGGCA
AGCGCCGCGTTGAGCGGCCTGCTCGCCGGCGAGGAAGCCTTGCGCCAGCAACTGGCCGCCGGCGACGACTAC
GTGCTGGCCTTCACCCTGCCGCCTGCGTACCTTGGCGAGATTCGCGCCGCGTGGCCGGCCATGGCCGTCATC
GGCCGGGTCGAGGCGGGGCAGGGGGTGCACCTGCTCGACGCCGACGGAAAGGAACTCATACCGGCCGTGGCC
GGCTACCAACATTTCGGAACCCAACGTGACTGA
Translation:
MGEFELIRRFFAAAACAAPATEVALGIGDDCALLAPPAGEQLAVSTDTLVEGVHFPAGCDPFLLAQRALAVS
ASDLAAMGAAPLAFTLALTLPKAEAEWLQGFARGLDAMARQCGLALVGGDTTRGPLSMTLTVFGRVPAGQAL
TRAGARPGDLLCVGGPLGEAGAALELVLERRSAPAEVAEPLLARYWTPAPQFGLGLALRGKASAALDISDGL
LADCGHIARASGVALLVECQRLQASAALSGLLAGEEALRQQLAAGDDYVLAFTLPPAYLGEIRAAWPAMAVI
GRVEAGQGVHLLDADGKELIPAVAGYQHFGTQRD*
AnnotationID:2341GeneID:2333
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:00
Gene Name:thiL
Confidence Code:2
GeneProduct:thiamine monophosphate kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:thiamin-phosphate kinase
Functional Category Confidence Code:5
COGs:COG0611,COG0309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG54766.1|AE005221_3 (AE005221) thiamin-monophosphate kinase [Escherichia coli O157:H7 EDL933]
Length = 325
Score =  239 bits (610), Expect = 2e-62
Identities = 145/323 (44%), Positives = 194/323 (60%), Gaps = 7/323 (2%)

gb|AAG54766.1|AE005221_3  (AE005221) thiamin-monophosphate kinase [Escherichia coli O157:H7 EDL933]
Length: 330
PctIdentity: 44.24
PctSimilariy: 60.00
Gaps: 13
BitScore: 619.0






 
Structural Features:
gnl|CDD|10481 COG0611, ThiL, Thiamine monophosphate kinase [Coenzyme metabolism]
Length = 317
Score =  303 bits (777), Expect = 4e-83
Identities = 155/322 (48%), Positives = 201/322 (62%), Gaps = 12/322 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4669




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21815




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2333
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3966
                           PA4051_tr
                           translation of PA4051
                           322
                           97.82
                           98.75
                           0
                           1600.0
     

     
     
120342
                           gb|AAG07438.1|AE004821_11
                           (AE004821) thiamine monophosphate kinase [Pseudomonas aeruginosa PAO1]
                           322
                           97.82
                           98.75
                           0
                           1600.0
     

     
     
120343
                           gb|AAO54237.1|
                           (AE016858) thiamine monophosphate kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           68.42
                           76.78
                           3
                           1081.0
     

     
     
120344
                           gb|AAN66146.1|AE016242_14
                           (AE016776) thiamine monophosphate kinase [Pseudomonas putida KT2440]
                           330
                           64.24
                           72.42
                           16
                           1017.0
     

     
     
120345
                           emb|CAD16475.1|
                           (AL646071) PROBABLE THIAMINE-MONOPHOSPHATE KINASE PROTEIN [Ralstonia solanacearum]
                           342
                           45.90
                           54.97
                           30
                           660.0
     

     






      

          
GC ORFID: 45335How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4051Glimmer Score: 

          
Start: 3961081Stop: 3960113

          
Length: 969


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4051 translation of PA4051Homolog Bit Score 620.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5267 (ORF: BLASTX 413.0), t_PA4051 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTGAGTTCGAGCTGATCCGCCGCTTCTTCGCCGCGGCCGCCTGCGCGGCGCCGGCGACGGAGGTGGCC 
CTCGGCATCGGCGACGACTGTGCCCTGCTGGCGCCGCCTGCCGGCGAACAGCTGGCGGTCTCCACCGACACC 
CTGGTGGAAGGTGTGCATTTTCCCGCCGGTTGCGACCCTTTCCTTCTTGCCCAGCGCGCCCTGGCGGTCTCC 
GCCAGCGACCTGGCGGCGATGGGCGCCGCGCCCCTGGCCTTCACCCTGGCCCTGACCTTGCCGAAGGCCGAA 
GCCGAGTGGTTGCAGGGCTTCGCCCGCGGCCTCGACGCCATGGCCCGGCAGTGCGGCCTGGCCCTGGTCGGC 
GGCGACACCACGCGCGGCCCGCTGAGCATGACCCTGACCGTATTCGGCAGGGTGCCGGCCGGCCAGGCGCTG 
ACCCGCGCCGGTGCGCGCCCTGGCGACCTGCTCTGCGTCGGGGGCCCGCTCGGCGAGGCTGGAGCGGCTCTG 
GAACTGGTGCTGGAGCGAAGATCGGCGCCCGCCGAGGTGGCCGAACCGCTGCTGGCGCGCTACTGGACGCCG 
GCCCCGCAATTCGGTCTAGGCCTCGCCCTGCGCGGCAAGGCCAGCGCCGCCCTGGACATCTCCGACGGGCTG 
CTCGCCGATTGCGGGCATATCGCCCGCGCTTCCGGCGTTGCCCTGCTGGTCGAATGCCAGCGCTTGCAGGCA 
AGCGCCGCGTTGAGCGGCCTGCTCGCCGGCGAGGAAGCCTTGCGCCAGCAACTGGCCGCCGGCGACGACTAC 
GTGCTGGCCTTCACCCTGCCGCCTGCGTACCTTGGCGAGATTCGCGCCGCGTGGCCGGCCATGGCCGTCATC 
GGCCGGGTCGAGGCGGGGCAGGGGGTGCACCTGCTCGACGCCGACGGAAAGGAACTCATACCGGCCGTGGCC 
GGCTACCAACATTTCGGAACCCAACGTGACTGA