ViewGene
Locus Name:
GeneID:
Location:

GeneID:2332
TrivialName: PA14_30550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30550
PAO1 Ortholog Locus:PA2594
Sequence Length:960
Protein Length:319
Start: 2644483
Stop: 2645442
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05982.1|AE004688_4 (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 315/319 (98%), Positives = 318/319 (99%)
Sequence:
ATGTCTCGTCCGTTCCTGCGTCGCTTGGCCATCGTGTTTGCCGCTTCCGTCGTCCTGTCGGGCATTGGTGGC
GCACAGGCCGAGGAGGTCCTGCGCATCGGCTTCCAGAAATCCTCGACTCTGCTGACCCTGATCCGCAGCCAG
GGCACCTTCGAGCGCGAGTTGGCCAGGCAGGGCATCCGGGTGTCCTGGCATGAGTTCCCCAGCGGCCTGCCG
TTGCTCGAATCGCTCAATGTCGGCAACGTCGATCTCTCCGCCGACGTCGCCGACACCGTGCCGGTGTTCGCC
CAGGCGGCGGGTGCTCGCCTGACCTACTTCGCCCGCGAAACACCTTCGCCCGCGGCGCAGGCGATACTGGTC
GGCGAACATTCGCCGCTGAAGTCCCTGGCTGAGCTGAAGGGCAAGCGCATCGCCGTGACCAAGGCCGCCGGC
AGCCACTACCTGCTGATCGCCGCGCTGGCCAGCGCCGGGCTTGAGTTCTCCGACATCCAGCCAGCCTACCTG
ACGCCAGCCGACGGCCGCGCCGCCTTCGAGAACGGCAAGGTCGACGCCTGGGTGACCTGGGACCCCTACGTG
GCAAGCGCCCAGCGCCAGCAACGCGCGCGGGTACTGGCCGACGGCCAGGGCCTGGCCAGCTACCAGCGCTAC
TACCTCGCCTCCAGCGACTACGCCAGGAAACATCCTGAAGTGCTCCAGCAGGTCTTCGCCGAACTGCAGCGC
ACCGGGCGCTGGCTCAAGAGCTACCCGGCCGAGGCGGCCAAGGTGCTGGGGCCGCTGTGGGGCAATCTCGAT
GCCGCTACCGTCGAGCAGGCGAATGCGCGGCGCAGCTACGACGTACAACCGGTGAGCGCAGATGGTCTCGAC
GAGCAACAGCGCATCGCCGACGCCTTCCACGCCCAGGGACTGCTACCCAAACCGGTGGATACGCGCGCCGTG
GAGGTATGGCAGCCGCGGCACTGA
Translation:
MSRPFLRRLAIVFAASVVLSGIGGAQAEEVLRIGFQKSSTLLTLIRSQGTFERELARQGIRVSWHEFPSGLP
LLESLNVGNVDLSADVADTVPVFAQAAGARLTYFARETPSPAAQAILVGEHSPLKSLAELKGKRIAVTKAAG
SHYLLIAALASAGLEFSDIQPAYLTPADGRAAFENGKVDAWVTWDPYVASAQRQQRARVLADGQGLASYQRY
YLASSDYARKHPEVLQQVFAELQRTGRWLKSYPAEAAKVLGPLWGNLDAATVEQANARRSYDVQPVSADGLD
EQQRIADAFHAQGLLPKPVDTRAVEVWQPRH*
AnnotationID:2340GeneID:2332
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:14
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic aliphatic sulfonate-binding protein
Cell Localization:()
Synonyms:ssuA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC-type transporter periplasmic sulfonate-binding protein
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68836.1|AE016516_6 (AE016786) periplasmic aliphatic sulfonate-binding protein,
           putative [Pseudomonas putida KT2440]
          Length = 318

 Score =  460 bits (1183), Expect = e-129
 Identities = 230/312 (73%), Positives = 262/312 (83%), Gaps = 2/312 (0%)

>gb|AAO55932.1| (AE016864) ABC transporter, periplasmic substrate-binding protein,
           aliphatic sulfonates family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 324

 Score =  412 bits (1059), Expect = e-114
 Identities = 204/315 (64%), Positives = 248/315 (78%), Gaps = 4/315 (1%)








 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  95.2% aligned
Score =  175 bits (445), Expect = 6e-45
Identities = 91/319 (28%), Positives = 146/319 (45%), Gaps = 7/319 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4667




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21813




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33164




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2332_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2332
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3964
                           PA2594_tr
                           translation of PA2594
                           319
                           98.74
                           99.68
                           0
                           1598.0
     

     
     
120320
                           gb|AAG05982.1|AE004688_4
                           (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           319
                           98.74
                           99.68
                           0
                           1598.0
     

     
     
120321
                           gb|AAN68836.1|AE016516_6
                           (AE016786) periplasmic aliphatic sulfonate-binding protein, putative [Pseudomonas putida KT2440]
                           320
                           72.18
                           82.50
                           3
                           1180.0
     

     
     
120322
                           gb|AAO55932.1|
                           (AE016864) ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family [Pseudomonas syringae pv. tomato str. DC3000]
                           327
                           63.91
                           77.98
                           11
                           1064.0
     

     
     
120325
                           gb|AAC31904.1|
                           (AF075709) putative sulfonate binding protein precursor [Pseudomonas putida]
                           326
                           46.93
                           64.41
                           12
                           737.0
     

     






      

          
GC ORFID: 45334How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2594Glimmer Score: 

          
Start: 2309443Stop: 2308484

          
Length: 960


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2594 translation of PA2594Homolog Bit Score 620.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene277 (ORF: BLASTX 417.0), psyr_15may02_Scaffold6_revised_gene6500 (ORF: BLASTX 275.0), t_PA3445 (ORF: BLASTX 270.0), psyr_15may02_Scaffold6_revised_gene6543 (ORF: BLASTX 223.0), t_PA2594 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTCGTCCGTTCCTGCGTCGCTTGGCCATCGTGTTTGCCGCTTCCGTCGTCCTGTCGGGCATTGGTGGC 
GCACAGGCCGAGGAGGTCCTGCGCATCGGCTTCCAGAAATCCTCGACTCTGCTGACCCTGATCCGCAGCCAG 
GGCACCTTCGAGCGCGAGTTGGCCAGGCAGGGCATCCGGGTGTCCTGGCATGAGTTCCCCAGCGGCCTGCCG 
TTGCTCGAATCGCTCAATGTCGGCAACGTCGATCTCTCCGCCGACGTCGCCGACACCGTGCCGGTGTTCGCC 
CAGGCGGCGGGTGCTCGCCTGACCTACTTCGCCCGCGAAACACCTTCGCCCGCGGCGCAGGCGATACTGGTC 
GGCGAACATTCGCCGCTGAAGTCCCTGGCTGAGCTGAAGGGCAAGCGCATCGCCGTGACCAAGGCCGCCGGC 
AGCCACTACCTGCTGATCGCCGCGCTGGCCAGCGCCGGGCTTGAGTTCTCCGACATCCAGCCAGCCTACCTG 
ACGCCAGCCGACGGCCGCGCCGCCTTCGAGAACGGCAAGGTCGACGCCTGGGTGACCTGGGACCCCTACGTG 
GCAAGCGCCCAGCGCCAGCAACGCGCGCGGGTACTGGCCGACGGCCAGGGCCTGGCCAGCTACCAGCGCTAC 
TACCTCGCCTCCAGCGACTACGCCAGGAAACATCCTGAAGTGCTCCAGCAGGTCTTCGCCGAACTGCAGCGC 
ACCGGGCGCTGGCTCAAGAGCTACCCGGCCGAGGCGGCCAAGGTGCTGGGGCCGCTGTGGGGCAATCTCGAT 
GCCGCTACCGTCGAGCAGGCGAATGCGCGGCGCAGCTACGACGTACAACCGGTGAGCGCAGATGGTCTCGAC 
GAGCAACAGCGCATCGCCGACGCCTTCCACGCCCAGGGACTGCTACCCAAACCGGTGGATACGCGCGCCGTG 
GAGGTATGGCAGCCGCGGCACTGA