ViewGene

Locus Name:
GeneID:
Location:

GeneID:2331
TrivialName: PA14_33380
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33380
PAO1 Ortholog Locus:PA2421
Sequence Length:921
Protein Length:306
Start: 2939415
Stop: 2938495
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05809.1|AE004669_6 (AE004669) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/306 (99%), Positives = 303/306 (99%) with PA2421 of PAO1.
Sequence:
ATGCGTGCAGCCCTGCTACCCACCTTCGGCGCCCTCTCCGCCGCGCTCTGCCTGGAGGCCCGCGCCGACGCC
GTCGCGCTGCCGCCGCTGGCGCTCGGCAACGCCAGCTTCATGGACGGCGTCAGCCGTCCCGGCATGCTCTTC
GAACTGCCCCTGCAATACGTTCGGGCGAACAACGCCAGCGACGCCGGCGGGCATTCGGTTCCCGGTCGGCAA
CGGGTTCGTGGCACCACGCTGTTGCCGCACTTCGCCTACCTCAGCCAGAACACCCTGCTCGGCGCCCACTAC
GGCGCCGAAGTGCTGCTGCCGCTGGTACGCCTGGACCTCGATATCGACGGCGGCCCGGACGGCCGGCGCACC
CGCCAGGGCGACCTGATCGTCAGTCCGCTGATGCTGCAATGGGGGCCCGCTACGCTGTTCGGCCGCCCCTAC
TGGCAGCGCCTGAACTTCGTCTTCTCCCTGCCCACCGGCGACTACGACAAGGACGCCGCGATCAACACCGGC
AGCAACACCTGGATCTTCAACCCGCACTACGCCTTCACCTGGGAACTGGGCGAGCGCCTGGAACTCAGCGGC
CGCCTGCACTACGCCTGGATCAGCCGCAACGACGACCCCTCGCCGCGCCTGGGCGCAAACGACGTACAGCCG
GGACAGGCGCTGCACGCGAACTTCTCGATCTCCTACGCGCTGGACCCGCACTGGCGGATCGGCCTGGCCGGC
TACCAGTTGAAACAGATCAGCGCCGACCGCATCGACGGCCACCGGCAGGCCGACTCGCGCGAGCAGGTCTTC
GGCATAGGCCCGGGGGTGATGTATAGCCAGGGCAGGCAAACGCTGTTCGCCAACCTCTACGCCGAAAGCGGC
GCGCGCAACCGCAGCGAAGGCAACCAACTAACCCTGCGCTACCTGCTGGCGTTCTGA
Translation:
MRAALLPTFGALSAALCLEARADAVALPPLALGNASFMDGVSRPGMLFELPLQYVRANNASDAGGHSVPGRQ
RVRGTTLLPHFAYLSQNTLLGAHYGAEVLLPLVRLDLDIDGGPDGRRTRQGDLIVSPLMLQWGPATLFGRPY
WQRLNFVFSLPTGDYDKDAAINTGSNTWIFNPHYAFTWELGERLELSGRLHYAWISRNDDPSPRLGANDVQP
GQALHANFSISYALDPHWRIGLAGYQLKQISADRIDGHRQADSREQVFGIGPGVMYSQGRQTLFANLYAESG
ARNRSEGNQLTLRYLLAF*
AnnotationID:2339GeneID:2331
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2421
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4665
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21811
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2331

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3962 PA2421_tr translation of PA2421 306 99.01 99.01 0 1600.0
120318 gb|AAG05809.1|AE004669_6 (AE004669) hypothetical protein PA2421 [Pseudomonas aeruginosa PAO1] 306 99.01 99.01 0 1600.0
3963 PA2474_tr translation of PA2474 319 48.58 62.69 29 774.0
120319 gb|AAG05862.1|AE004675_3 (AE004675) hypothetical protein PA2474 [Pseudomonas aeruginosa PAO1] 319 48.58 62.69 29 774.0
GC ORFID: 45333How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2421Glimmer Score:
Start: 2014501Stop: 2015421
Length: 921
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2421 translation of PA2421Homolog Bit Score 620.0
Other Homologs: t_PA2474 (ORF: BLASTX 301.0), t_PA2421 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTGCAGCCCTGCTACCCACCTTCGGCGCCCTCTCCGCCGCGCTCTGCCTGGAGGCCCGCGCCGACGCC
GTCGCGCTGCCGCCGCTGGCGCTCGGCAACGCCAGCTTCATGGACGGCGTCAGCCGTCCCGGCATGCTCTTC
GAACTGCCCCTGCAATACGTTCGGGCGAACAACGCCAGCGACGCCGGCGGGCATTCGGTTCCCGGTCGGCAA
CGGGTTCGTGGCACCACGCTGTTGCCGCACTTCGCCTACCTCAGCCAGAACACCCTGCTCGGCGCCCACTAC
GGCGCCGAAGTGCTGCTGCCGCTGGTACGCCTGGACCTCGATATCGACGGCGGCCCGGACGGCCGGCGCACC
CGCCAGGGCGACCTGATCGTCAGTCCGCTGATGCTGCAATGGGGGCCCGCTACGCTGTTCGGCCGCCCCTAC
TGGCAGCGCCTGAACTTCGTCTTCTCCCTGCCCACCGGCGACTACGACAAGGACGCCGCGATCAACACCGGC
AGCAACACCTGGATCTTCAACCCGCACTACGCCTTCACCTGGGAACTGGGCGAGCGCCTGGAACTCAGCGGC
CGCCTGCACTACGCCTGGATCAGCCGCAACGACGACCCCTCGCCGCGCCTGGGCGCAAACGACGTACAGCCG
GGACAGGCGCTGCACGCGAACTTCTCGATCTCCTACGCGCTGGACCCGCACTGGCGGATCGGCCTGGCCGGC
TACCAGTTGAAACAGATCAGCGCCGACCGCATCGACGGCCACCGGCAGGCCGACTCGCGCGAGCAGGTCTTC
GGCATAGGCCCGGGGGTGATGTATAGCCAGGGCAGGCAAACGCTGTTCGCCAACCTCTACGCCGAAAGCGGC
GCGCGCAACCGCAGCGAAGGCAACCAACTAACCCTGCGCTACCTGCTGGCGTTCTGA