ViewGene
Locus Name:
GeneID:
Location:

GeneID:2330
TrivialName: PA14_45460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45460
PAO1 Ortholog Locus:PA1467
Sequence Length:972
Protein Length:323
Start: 4048387
Stop: 4047416
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04856.1|AE004576_5 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 321/323 (99%), Positives = 321/323 (99%)
Sequence:
ATGTCCAAGCCCACGGTGCGCGTGCTCGCCCTGCTCGAACTGCTGCAGAGCCACGGCCAGCTCAGCGGTAGC
GAGCTGGCCAGGCGCCTGGAGGTGGATGGACGGACGCTGCGTCGCTATATCGTCGCCCTCGAGGAGCTGGGC
ATTCCCATCTCGGCGGAGCGCGGACGCCATGGCGGTTACCGCCTGGTGGCCGGTTTCAAGCTCCCGCCGCTG
ATGTTCAGCGCGGAGGAAACCCTGGCCGTGTCCCTCGGCCTGCTGGCGGTGCGCAGTCTCGGCCTGGGCGAA
AGCGAGCTGGCCCTGGAAAGTGCGCAGGCCAAGCTGAGCAGGGTGATGCCCGATGCGCTGCGGCGGCGCCTC
GTGGCGCTCCGCGAGACCGCCAGCCTGGACCTGGCCCGCGCCCGGGCGGGAACCAGTGTGGCGGCGCTGGCG
ACCCTCGCCGAAGCCGCCCAGGTCCGTGCGCGGGTCGAGTTCCGCTATCGCGACCCGCAGGGCGCCGAAACC
CTCCGCCAACTCGATCCCTACGGCCTGGTCTATCGCAACGGCTGCTGGTACGTCAGCGGTTTCTGCCACCTG
CGCCAGGCGTTGCGCTCGTTCCGTCTCGATCGCCTGGACGCGCCGCGCATGCTGGCGGAGCGCTTCGAGCGA
CCGGCGGATTTCGATACCCTCCGCCACCTACGGGAGAGCTTCGCCCGGATGCCGCGCGCCTACCCGGTGGAA
ATCCTGATGCGGGCTGCGAGGGAGCAGGTGGTCGCGGTGCTCGGCGAGCCCCTCGGTCTGCTCGCCGAGGTC
GATGGCGGTACGCTGTTGCGCGCCAGCACCGACGACCTGGACTGGTTCGCCCGGCGCCTGTGCGGCCTGCCG
TTCGACTTCGAGGTCAGGCAGCCGCTGGAGTTGCGCGAGCCGTTGAGGCGCCAGGCCGAGCGTGTCCTGCGT
AACCTGGGCCAGGAGGAAGCTTCGGATCACAGGTAG
Translation:
MSKPTVRVLALLELLQSHGQLSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHGGYRLVAGFKLPPL
MFSAEETLAVSLGLLAVRSLGLGESELALESAQAKLSRVMPDALRRRLVALRETASLDLARARAGTSVAALA
TLAEAAQVRARVEFRYRDPQGAETLRQLDPYGLVYRNGCWYVSGFCHLRQALRSFRLDRLDAPRMLAERFER
PADFDTLRHLRESFARMPRAYPVEILMRAAREQVVAVLGEPLGLLAEVDGGTLLRASTDDLDWFARRLCGLP
FDFEVRQPLELREPLRRQAERVLRNLGQEEASDHR*
AnnotationID:2338GeneID:2330
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:24
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1467
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2378
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF09645.1|AE001868_7 (AE001868) repressor protein, putative [Deinococcus radiodurans]
          Length = 316

 Score =  224 bits (571), Expect = 5e-58
 Identities = 133/308 (43%), Positives = 182/308 (59%), Gaps = 5/308 (1%)

>dbj|BAC68611.1| (AP005024) putative transcriptional regulator [Streptomyces
           avermitilis MA-4680]
          Length = 350

 Score =  192 bits (487), Expect = 3e-48
 Identities = 133/344 (38%), Positives = 186/344 (54%), Gaps = 35/344 (10%)








 
Structural Features:
COG2378, Predicted transcriptional regulator [Transcription]
CD-Length = 311 residues,  99.4% aligned
Score =  227 bits (579), Expect = 2e-60
Identities = 115/316 (36%), Positives = 167/316 (52%), Gaps = 7/316 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21809




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37351




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2330_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2330
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3961
                           PA1467_tr
                           translation of PA1467
                           323
                           99.38
                           99.38
                           0
                           1598.0
     

     
     
120316
                           gb|AAG04856.1|AE004576_5
                           (AE004576) hypothetical protein PA1467 [Pseudomonas aeruginosa PAO1]
                           323
                           99.38
                           99.38
                           0
                           1598.0
     

     
     
120317
                           gb|AAF09645.1|AE001868_7
                           (AE001868) repressor protein, putative [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           327
                           42.50
                           57.49
                           15
                           571.0
     

     






      

          
GC ORFID: 45332How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1467Glimmer Score: 

          
Start: 905522Stop: 906493

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1467 translation of PA1467Homolog Bit Score 620.0

          
Other Homologs:  t_PA1467 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAGCCCACGGTGCGCGTGCTCGCCCTGCTCGAACTGCTGCAGAGCCACGGCCAGCTCAGCGGTAGC 
GAGCTGGCCAGGCGCCTGGAGGTGGATGGACGGACGCTGCGTCGCTATATCGTCGCCCTCGAGGAGCTGGGC 
ATTCCCATCTCGGCGGAGCGCGGACGCCATGGCGGTTACCGCCTGGTGGCCGGTTTCAAGCTCCCGCCGCTG 
ATGTTCAGCGCGGAGGAAACCCTGGCCGTGTCCCTCGGCCTGCTGGCGGTGCGCAGTCTCGGCCTGGGCGAA 
AGCGAGCTGGCCCTGGAAAGTGCGCAGGCCAAGCTGAGCAGGGTGATGCCCGATGCGCTGCGGCGGCGCCTC 
GTGGCGCTCCGCGAGACCGCCAGCCTGGACCTGGCCCGCGCCCGGGCGGGAACCAGTGTGGCGGCGCTGGCG 
ACCCTCGCCGAAGCCGCCCAGGTCCGTGCGCGGGTCGAGTTCCGCTATCGCGACCCGCAGGGCGCCGAAACC 
CTCCGCCAACTCGATCCCTACGGCCTGGTCTATCGCAACGGCTGCTGGTACGTCAGCGGTTTCTGCCACCTG 
CGCCAGGCGTTGCGCTCGTTCCGTCTCGATCGCCTGGACGCGCCGCGCATGCTGGCGGAGCGCTTCGAGCGA 
CCGGCGGATTTCGATACCCTCCGCCACCTACGGGAGAGCTTCGCCCGGATGCCGCGCGCCTACCCGGTGGAA 
ATCCTGATGCGGGCTGCGAGGGAGCAGGTGGTCGCGGTGCTCGGCGAGCCCCTCGGTCTGCTCGCCGAGGTC 
GATGGCGGTACGCTGTTGCGCGCCAGCACCGACGACCTGGACTGGTTCGCCCGGCGCCTGTGCGGCCTGCCG 
TTCGACTTCGAGGTCAGGCAGCCGCTGGAGTTGCGCGAGCCGTTGAGGCGCCAGGCCGAGCGTGTCCTGCGT 
AACCTGGGCCAGGAGGAAGCTTCGGATCACAGGTAG