ViewGene
Locus Name:
GeneID:
Location:

GeneID:233
TrivialName: PA14_52180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52180
PAO1 Ortholog Locus:PA0934
Sequence Length:2244
Protein Length:747
Start: 4628504
Stop: 4626261
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04323.1|AE004528_1 (AE004528) GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
Identities = 747/747 (100%), Positives = 747/747 (100%)
Sequence:
ATGGTACAGGTGAGAGCGCACCAGCCGGTCAACACCGACGGCAGTATCAACCTCGAGGCCTGGCTGGACCAC
GTCCAGAACCTCGTCCCCGGGCTCGATCGTCAGGGCTTGCTGGAGGCTTGCGAGTTCGCTCGCGAATCCGAG
CAGCGAGCGATCGCCGCACAGAACTCCTGGGCAGAAGGCACGTCCAGCTTCCAGACCGGACTGGAAATCGCC
GAGATCCTCGCGGACCTCAAGCTGGATCAGGAGTCCCTGGTCGCCGCGGTCATCTATCGAGGCGTGCGGGAA
GGCAAGATCACCCTGGAAGCGGTCAACAAGCATTTCGGGCCGGTGGTGGCCAAGCTGATCGAGGGCGTGCTG
CGCATGGCCGCAATCAGCGCCAGCCTCAATCCGCGCCATTCCATGGTGCTGGGTACCCAGGCGCAGGTGGAG
AACCTGCGCAAGATGCTGGTGGCGATGGTCGACGACGTTCGCGTCGCTCTGATCAAGCTGGCCGAGCGCACC
TGCGCCATTCGCGCGGTGAAGAATGCCGACGAGGAAAAGCGCCACCGCGTCGCCCGGGAAGTCTTCGATATC
TACGCGCCGCTGGCCCACCGCCTGGGCATCGGGCATATCAAGTGGGAGCTGGAGGACCTGTCCTTCCGTTAC
CTCGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGCTGCACGAGCGCCGGCTGGATCGCGAGCAGTACATC
GCCAACGTGATGAGCCAGTTGAAGGAAGCTCTCGCGGCCACCGGCGTACAGGCCGATCTCAGCGGGCGGGCG
AAACACATCTATTCGATCTGGCGCAAGATGCAGCGCAAGGGCCTGGACTTCAGCCAGATCTACGACGTTCGC
GCCGTGCGCGTGCTCGTTCCGGAGATGCGCGACTGCTACACCGCGCTGGGCATCGTGCATACCCTCTGGCGG
CACATTCCCAAGGAGTTCGACGACTACATCGCCAACCCCAAGGAAAACGGCTATCGCTCGCTGCATACCGCA
GTGATCGGCCCCGAGGGGAAGGTGCTGGAAGTACAGATCCGTACCCACTCCATGCACGAAGAGGCGGAGCTC
GGGGTCTGCGCGCACTGGCGCTACAAGGGGACCGACGTCAAGGCCAGCTCCAACCATTACGAGGAAAAGATC
TCCTGGCTGCGCCAGGTGCTCGAATGGCACGAGGAACTGGGCGACATCGGTGGCCTGGCGGAGCAACTGCGG
GTCGATATCGAGCCGGACAGGGTCTACGTCTTCACTCCCGACGGCCACGCCATCGACCTGCCCAAGGGCGCG
ACCCCGCTGGATTTCGCCTATCGGGTCCACACTGAAGTCGGGCACAACTGCCGCGGGGCGAAGATCAACGGA
CGCATCGTGCCGCTGAACTACAGCCTGCAGACCGGCGAGCAGGTCGAGATCATCACCGGCAAGCACAGCGGT
CCGAGCCGTGACTGGCTGAACAGCAACCTGGGCTATGTCACCACCTCCCGGGCGCGGGCGAAGATCGTCCAC
TGGTTCAAGCTGCAGGCGCGGGACCAGAACGTCGCTGCCGGCAAGGCCCTGATCGAACGCGAGCTGTCGCGC
CTGGCGCTGCCGCCGGTGGATTTCGACCGGCTGGCGGAGAAGGCCAACGTGCGTACCGCCGAGGATATGTTC
GCCGCTCTCGGCGCCGGCGACCTGCGCTTGGCGCACCTGGTCAACTATGCCCAGCAACTGGTCGAGCCGGAC
CGCGACAGCGAGCAACTCGAACTGATCCCGCGCAAGCCGAGCAAGATCGGCCACGGCAAGCGCGGCGACGTG
CAGATCCAGGGCGTCGGCAACCTCCTGACGCAGATGGCCGGCTGCTGCCAGCCGCTGCCGGGAGATCCCATC
GTCGGCTACATCACGCTGGGCCGTGGGGTCACCATCCACCGCCAGGATTGCGCCACCGCGCTGCAACTGGCG
GGACGCGAACCGGAGCGGATGATCCAGGTCAGTTGGGGGCCGGAGCCGGTTCGCACCTATCCGGTGGATATC
GCGATCCGTGCCTATGATCGTTCCGGCCTGTTGCGCGACGTGTCCCAGGTGCTGCTCAATGAGCGGATCAAC
GTTCTGGCGGTGAATACCCGTTCGAACAAGGAAGACAACACCGCGACCATGCAACTGACCATCGAGATTCCC
GGTCTGGACGCTCTTGGACGCCTGCTGGCGCGCGTTTCGCAACTGCCCAACATCATCGAGGCGCGGCGCAAC
CGTACGCCTTGA
Translation:
MVQVRAHQPVNTDGSINLEAWLDHVQNLVPGLDRQGLLEACEFARESEQRAIAAQNSWAEGTSSFQTGLEIA
EILADLKLDQESLVAAVIYRGVREGKITLEAVNKHFGPVVAKLIEGVLRMAAISASLNPRHSMVLGTQAQVE
NLRKMLVAMVDDVRVALIKLAERTCAIRAVKNADEEKRHRVAREVFDIYAPLAHRLGIGHIKWELEDLSFRY
LEPDQYKQIAKLLHERRLDREQYIANVMSQLKEALAATGVQADLSGRAKHIYSIWRKMQRKGLDFSQIYDVR
AVRVLVPEMRDCYTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHSMHEEAEL
GVCAHWRYKGTDVKASSNHYEEKISWLRQVLEWHEELGDIGGLAEQLRVDIEPDRVYVFTPDGHAIDLPKGA
TPLDFAYRVHTEVGHNCRGAKINGRIVPLNYSLQTGEQVEIITGKHSGPSRDWLNSNLGYVTTSRARAKIVH
WFKLQARDQNVAAGKALIERELSRLALPPVDFDRLAEKANVRTAEDMFAALGAGDLRLAHLVNYAQQLVEPD
RDSEQLELIPRKPSKIGHGKRGDVQIQGVGNLLTQMAGCCQPLPGDPIVGYITLGRGVTIHRQDCATALQLA
GREPERMIQVSWGPEPVRTYPVDIAIRAYDRSGLLRDVSQVLLNERINVLAVNTRSNKEDNTATMQLTIEIP
GLDALGRLLARVSQLPNIIEARRNRTP*
AnnotationID:243GeneID:233
AnnotatorUID: danlee
Modification Date/Time: 2004-05-10 14:02:41
Gene Name:relA
Confidence Code:2
GeneProduct:GTP pyrophosphokinase
Cell Localization:()
Synonyms:PA0934
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0317
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases 
[Signal transduction mechanisms / Transcription]
       CD-Length = 701 residues, 100.0% aligned
       Score =  891 bits (2305), Expect = 0.0






   
Genomic Context:






   
Comment:


















    ReferenceID:469




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:233
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
397
                           PA0934_tr
                           translation of PA0934
                           747
                           99.99
                           99.99
                           0
                           3852.0
     

     
     
22739
                           gb|AAG04323.1|AE004528_1
                           (AE004528) GTP pyrophosphokinase [Pseudomonas aeruginosa PAO1]
                           747
                           99.99
                           99.99
                           0
                           3852.0
     

     
     
22740
                           gb|AAN67277.1|AE016354_4
                           (AE016780) GTP pyrophosphokinase [Pseudomonas putida KT2440]
                           747
                           87.41
                           93.44
                           1
                           3398.0
     

     
     
22741
                           gb|AAO55214.1|
                           (AE016861) GTP pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000]
                           747
                           86.34
                           92.50
                           3
                           3350.0
     

     
     
22742
                           gb|AAN56448.1|AE015781_8
                           (AE015781) GTP pyrophosphokinase [Shewanella oneidensis MR-1]
                           759
                           49.01
                           67.98
                           36
                           1913.0
     

     






      

          
GC ORFID: 43235How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0934Glimmer Score: 

          
Start: 325403Stop: 327646

          
Length: 2244


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0934 translation of PA0934Homolog Bit Score 1488.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6454 (ORF: BLASTX 1301.0), t_PA0934 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTACAGGTGAGAGCGCACCAGCCGGTCAACACCGACGGCAGTATCAACCTCGAGGCCTGGCTGGACCAC 
GTCCAGAACCTCGTCCCCGGGCTCGATCGTCAGGGCTTGCTGGAGGCTTGCGAGTTCGCTCGCGAATCCGAG 
CAGCGAGCGATCGCCGCACAGAACTCCTGGGCAGAAGGCACGTCCAGCTTCCAGACCGGACTGGAAATCGCC 
GAGATCCTCGCGGACCTCAAGCTGGATCAGGAGTCCCTGGTCGCCGCGGTCATCTATCGAGGCGTGCGGGAA 
GGCAAGATCACCCTGGAAGCGGTCAACAAGCATTTCGGGCCGGTGGTGGCCAAGCTGATCGAGGGCGTGCTG 
CGCATGGCCGCAATCAGCGCCAGCCTCAATCCGCGCCATTCCATGGTGCTGGGTACCCAGGCGCAGGTGGAG 
AACCTGCGCAAGATGCTGGTGGCGATGGTCGACGACGTTCGCGTCGCTCTGATCAAGCTGGCCGAGCGCACC 
TGCGCCATTCGCGCGGTGAAGAATGCCGACGAGGAAAAGCGCCACCGCGTCGCCCGGGAAGTCTTCGATATC 
TACGCGCCGCTGGCCCACCGCCTGGGCATCGGGCATATCAAGTGGGAGCTGGAGGACCTGTCCTTCCGTTAC 
CTCGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGCTGCACGAGCGCCGGCTGGATCGCGAGCAGTACATC 
GCCAACGTGATGAGCCAGTTGAAGGAAGCTCTCGCGGCCACCGGCGTACAGGCCGATCTCAGCGGGCGGGCG 
AAACACATCTATTCGATCTGGCGCAAGATGCAGCGCAAGGGCCTGGACTTCAGCCAGATCTACGACGTTCGC 
GCCGTGCGCGTGCTCGTTCCGGAGATGCGCGACTGCTACACCGCGCTGGGCATCGTGCATACCCTCTGGCGG 
CACATTCCCAAGGAGTTCGACGACTACATCGCCAACCCCAAGGAAAACGGCTATCGCTCGCTGCATACCGCA 
GTGATCGGCCCCGAGGGGAAGGTGCTGGAAGTACAGATCCGTACCCACTCCATGCACGAAGAGGCGGAGCTC 
GGGGTCTGCGCGCACTGGCGCTACAAGGGGACCGACGTCAAGGCCAGCTCCAACCATTACGAGGAAAAGATC 
TCCTGGCTGCGCCAGGTGCTCGAATGGCACGAGGAACTGGGCGACATCGGTGGCCTGGCGGAGCAACTGCGG 
GTCGATATCGAGCCGGACAGGGTCTACGTCTTCACTCCCGACGGCCACGCCATCGACCTGCCCAAGGGCGCG 
ACCCCGCTGGATTTCGCCTATCGGGTCCACACTGAAGTCGGGCACAACTGCCGCGGGGCGAAGATCAACGGA 
CGCATCGTGCCGCTGAACTACAGCCTGCAGACCGGCGAGCAGGTCGAGATCATCACCGGCAAGCACAGCGGT 
CCGAGCCGTGACTGGCTGAACAGCAACCTGGGCTATGTCACCACCTCCCGGGCGCGGGCGAAGATCGTCCAC 
TGGTTCAAGCTGCAGGCGCGGGACCAGAACGTCGCTGCCGGCAAGGCCCTGATCGAACGCGAGCTGTCGCGC 
CTGGCGCTGCCGCCGGTGGATTTCGACCGGCTGGCGGAGAAGGCCAACGTGCGTACCGCCGAGGATATGTTC 
GCCGCTCTCGGCGCCGGCGACCTGCGCTTGGCGCACCTGGTCAACTATGCCCAGCAACTGGTCGAGCCGGAC 
CGCGACAGCGAGCAACTCGAACTGATCCCGCGCAAGCCGAGCAAGATCGGCCACGGCAAGCGCGGCGACGTG 
CAGATCCAGGGCGTCGGCAACCTCCTGACGCAGATGGCCGGCTGCTGCCAGCCGCTGCCGGGAGATCCCATC 
GTCGGCTACATCACGCTGGGCCGTGGGGTCACCATCCACCGCCAGGATTGCGCCACCGCGCTGCAACTGGCG 
GGACGCGAACCGGAGCGGATGATCCAGGTCAGTTGGGGGCCGGAGCCGGTTCGCACCTATCCGGTGGATATC 
GCGATCCGTGCCTATGATCGTTCCGGCCTGTTGCGCGACGTGTCCCAGGTGCTGCTCAATGAGCGGATCAAC 
GTTCTGGCGGTGAATACCCGTTCGAACAAGGAAGACAACACCGCGACCATGCAACTGACCATCGAGATTCCC 
GGTCTGGACGCTCTTGGACGCCTGCTGGCGCGCGTTTCGCAACTGCCCAACATCATCGAGGCGCGGCGCAAC 
CGTACGCCTTGA