ViewGene
Locus Name:
GeneID:
Location:

GeneID:2329
TrivialName: PA14_01320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01320
PAO1 Ortholog Locus:PA0108
Sequence Length:888
Protein Length:295
Start: 128595
Stop: 129482
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03498.1|AE004449_7 (AE004449) cytochrome c oxidase, subunit III [Pseudomonas aeruginosa PAO1]
Identities = 294/295 (99%), Positives = 294/295 (99%)
Sequence:
ATGGCAAGCCACGAACACTATTACGTCCCCGCCCAGAGCAAGTGGCCGATCATCGCCAGCATCGGCCTGCTG
GTGACGGTGTTCGGCCTGGGTACCTGGTTCAACGACCTCACCGCCGGCCACAAGGAATCCCATGGCCCGTGG
ATCTTCTTCGTCGGCGGGCTGATCATCGCCTACATGCTGTTCGGCTGGTTCGGCAACGTCATCCGCGAGAGC
CGCGCCGGACTCTACAGTGCGCAGATGGACCGCTCGTTCCGCTGGGGCATGAGCTGGTTCATCTTCTCCGAG
GTGATGTTCTTCGCCGCCTTCTTCGGCGCGCTGTTCTACGTCCGCCACTTCGCCGGTCCCTGGCTCGGCGGC
GAGGGTGCCAAGGGCGTGGCGCACATGCTCTGGCCGAACTTCCAGTACAGCTGGCCGCTGCTGCAGACCCCG
GACCCGAAGCTGTTCCCGCCGCCGAGCGCGGTGATCGAGCCGTGGAAGCTGCCGCTGATCAACACCATCCTG
CTGGTCACCTCCAGCTTCACCGTGACCTTCGCCCACCACGCCCTGAAGAAGAACAAGCGCGGCCCGCTCAAG
GCCTGGCTGGCGTTGACCGTGCTGCTGGGGATCGCCTTCCTGATCCTGCAGGCCGAGGAGTACGTGCACGCC
TACAACGAGCTGGGCCTGACCCTCGGCGCCGGTATCTACGGCTCGACCTTCTTCATGCTCACCGGCTTCCAC
GGCGCCCACGTGACCCTCGGCGCGCTGATCCTCAGCATCATGCTGATCCGCATCCTGCGCGGTCACTTCGAT
GCCGAGCACCACTTCGGCTTCGAGGCCGCCAGTTGGTACTGGCACTTCGTCGATGTGGTCTGGATCGGCCTG
TTCATCTTCGTCTACGTGATCTGA
Translation:
MASHEHYYVPAQSKWPIIASIGLLVTVFGLGTWFNDLTAGHKESHGPWIFFVGGLIIAYMLFGWFGNVIRES
RAGLYSAQMDRSFRWGMSWFIFSEVMFFAAFFGALFYVRHFAGPWLGGEGAKGVAHMLWPNFQYSWPLLQTP
DPKLFPPPSAVIEPWKLPLINTILLVTSSFTVTFAHHALKKNKRGPLKAWLALTVLLGIAFLILQAEEYVHA
YNELGLTLGAGIYGSTFFMLTGFHGAHVTLGALILSIMLIRILRGHFDAEHHFGFEAASWYWHFVDVVWIGL
FIFVYVI*
AnnotationID:2337GeneID:2329
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:29
Gene Name:coIII
Confidence Code:2
GeneProduct:cytochrome c oxidase, subunit III
Cell Localization:()
Synonyms:coxC, cox3
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00510,COG1845
Secondary Functional Category(ies):
EC Number:1.9.3.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65740.1|AE016200_4 (AE016774) cytochrome c oxidase, subunit III [Pseudomonas putida
           KT2440]
          Length = 295

 Score =  518 bits (1334), Expect = e-146
 Identities = 232/295 (78%), Positives = 264/295 (89%)

>gb|AAN57569.1|AE015892_9 (AE015892) cytochrome c oxidase subunit III [Shewanella oneidensis
           MR-1]
          Length = 291

 Score =  366 bits (940), Expect = e-101
 Identities = 179/294 (60%), Positives = 212/294 (72%), Gaps = 9/294 (3%)

>gb|AAM38726.1| (AE012038) cytochrome C oxidase subunit III [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 291

 Score =  346 bits (888), Expect = 8e-95
 Identities = 168/300 (56%), Positives = 206/300 (68%), Gaps = 14/300 (4%)






 
Structural Features:
pfam00510, COX3, Cytochrome c oxidase subunit III.
CD-Length = 258 residues,  98.1% aligned
Score =  191 bits (487), Expect = 8e-50
Identities = 109/289 (37%), Positives = 154/289 (53%), Gaps = 37/289 (12%)

COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 
[Energy production and conversion]
CD-Length = 209 residues,  94.3% aligned
Score =  171 bits (435), Expect = 9e-44
Identities = 88/232 (37%), Positives = 112/232 (48%), Gaps = 35/232 (15%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4661




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21807




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33487




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2329_cdd.html


    		




 
URL:

















    ReferenceID:35504




  
Author/Investigator(s):
        Schmetterer G, Valladares A, Pils D, Steinbach S, Pacher M, Muro-Pastor AM, Flores E, Herrero A.





  
Title:
        The coxBAC operon encodes a cytochrome c oxidase required for heterotrophic growth in the cyanobacterium Anabaena variabilis strain ATCC 29413.




  
PubMed:
        11591688


MedLine:
        




    
Source:
J Bacteriol. 2001 Nov;183(21):6429-34.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11591688









           
Homologs By Global Alignment 

           

       



     
Gene ID:2329
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3960
                           PA0108_tr
                           translation of PA0108
                           295
                           99.66
                           99.66
                           0
                           1601.0
     

     
     
120284
                           gb|AAG03498.1|AE004449_7
                           (AE004449) cytochrome c oxidase, subunit III [Pseudomonas aeruginosa PAO1]
                           295
                           99.66
                           99.66
                           0
                           1601.0
     

     
     
120285
                           gb|AAN65740.1|AE016200_4
                           (AE016774) cytochrome c oxidase, subunit III [Pseudomonas putida KT2440]
                           295
                           78.64
                           89.49
                           0
                           1334.0
     

     
     
120286
                           gb|AAN57569.1|AE015892_9
                           (AE015892) cytochrome c oxidase subunit III [Shewanella oneidensis MR-1]
                           298
                           60.06
                           71.14
                           10
                           949.0
     

     
     
120288
                           gb|AAM43065.1|
                           (AE012504) cytochrome C oxidase subunit III [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           301
                           56.81
                           68.43
                           16
                           895.0
     

     






      

          
GC ORFID: 45331How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0108Glimmer Score: 

          
Start: 5929934Stop: 5930821

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0108 translation of PA0108Homolog Bit Score 621.0

          
Other Homologs:  t_PA0108 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAAGCCACGAACACTATTACGTCCCCGCCCAGAGCAAGTGGCCGATCATCGCCAGCATCGGCCTGCTG 
GTGACGGTGTTCGGCCTGGGTACCTGGTTCAACGACCTCACCGCCGGCCACAAGGAATCCCATGGCCCGTGG 
ATCTTCTTCGTCGGCGGGCTGATCATCGCCTACATGCTGTTCGGCTGGTTCGGCAACGTCATCCGCGAGAGC 
CGCGCCGGACTCTACAGTGCGCAGATGGACCGCTCGTTCCGCTGGGGCATGAGCTGGTTCATCTTCTCCGAG 
GTGATGTTCTTCGCCGCCTTCTTCGGCGCGCTGTTCTACGTCCGCCACTTCGCCGGTCCCTGGCTCGGCGGC 
GAGGGTGCCAAGGGCGTGGCGCACATGCTCTGGCCGAACTTCCAGTACAGCTGGCCGCTGCTGCAGACCCCG 
GACCCGAAGCTGTTCCCGCCGCCGAGCGCGGTGATCGAGCCGTGGAAGCTGCCGCTGATCAACACCATCCTG 
CTGGTCACCTCCAGCTTCACCGTGACCTTCGCCCACCACGCCCTGAAGAAGAACAAGCGCGGCCCGCTCAAG 
GCCTGGCTGGCGTTGACCGTGCTGCTGGGGATCGCCTTCCTGATCCTGCAGGCCGAGGAGTACGTGCACGCC 
TACAACGAGCTGGGCCTGACCCTCGGCGCCGGTATCTACGGCTCGACCTTCTTCATGCTCACCGGCTTCCAC 
GGCGCCCACGTGACCCTCGGCGCGCTGATCCTCAGCATCATGCTGATCCGCATCCTGCGCGGTCACTTCGAT 
GCCGAGCACCACTTCGGCTTCGAGGCCGCCAGTTGGTACTGGCACTTCGTCGATGTGGTCTGGATCGGCCTG 
TTCATCTTCGTCTACGTGATCTGA