ViewGene

Locus Name:
GeneID:
Location:

GeneID:2328
TrivialName: PA14_30540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30540
PAO1 Ortholog Locus:PA2595
Sequence Length:957
Protein Length:318
Start: 2643371
Stop: 2644327
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05983.1|AE004688_5 (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 317/318 (99%), Positives = 317/318 (99%)
Sequence:
ATGCGTCAGaCCCTGAGCCTGTTCCTGCTTCTCTGCCTGCTCGTCGGCCAGGCCTGTGCCGACGAGCGCGTG
ACCCTGCGCCTGGCCGACCAGAAGGGCAACATGCGCGCCCAGTTGGAGGCTGCCGGCGCGCTGGACGACCTG
ACCTACGACATCCGCTGGTTCGAATTCCCCGCCGCCGCCGCCCTCGCCGAAGCACTCAATGCCGGTGCGGTG
GATGCCGGCATCATCGGCGACGCGCCATTGCTCTTCGCCCTGGCCGCCGGTGCCCGGCTGAAGGCCATCGCC
GTCGACAAATCCGATCCCTACGGTACCGCCGTGCTGGTGAGAGGGGATTCGCCGCTGCGCTCGGCCAACGAC
CTGAAAGGCCAGCGCATTGCCACCGGGCGCGGTTCCATCGGCCACTTCGTCGCGCTCAAGGCCTTGGCCTCG
GTCGGGCTGGGCGAGAAGGACGTCGAATTCCGCTTCCTCGGCCCGGTGGACGCGAAAATGGCCCTCGCCAAT
GGTTCCGTGGATGCCTGGGCGACCTGGGAGCCCTACACCGCGTTCGCGGAGACCGCCGACAAGGCTCGGGTA
CTGGTCGACGGTCGCGGCCTGTGGGCTGGCAACAGCTTCCTCGCTGCTACCGATAGCGCACTGGCCGACCCG
GCGAAACGCGCCGTGCTGCAGGACTACCTGCAACGCCTGGCCAGCGCCCAGCGCTGGGCGTACCTGCACCTG
GACGAGTATTCGCGAAGCCTGGCGCAGATCATCGGCTTCCCCGAGGACGCCGCGCGCTTGCAGTTCGAACGT
CGGCGCTTGCGTTGGCAGGCGCTGGATGAGCGAACGCTCGGCCAGCAGCAGGAGACCGCCGATTTCTACCAG
GCCCATGGATTGATTCCGCAGCGCCTCGATGTGCGGCCGACCTTCGCCAGCGGCTTTGCGGTCAGGCAGGCG
TCGGATGCGGATATCCGGTAG
Translation:
MRQTLSLFLLLCLLVGQACADERVTLRLADQKGNMRAQLEAAGALDDLTYDIRWFEFPAAAALAEALNAGAV
DAGIIGDAPLLFALAAGARLKAIAVDKSDPYGTAVLVRGDSPLRSANDLKGQRIATGRGSIGHFVALKALAS
VGLGEKDVEFRFLGPVDAKMALANGSVDAWATWEPYTAFAETADKARVLVDGRGLWAGNSFLAATDSALADP
AKRAVLQDYLQRLASAQRWAYLHLDEYSRSLAQIIGFPEDAARLQFERRRLRWQALDERTLGQQQETADFYQ
AHGLIPQRLDVRPTFASGFAVRQASDADIR*
AnnotationID:2336GeneID:2328
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 10:10:58
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic aliphatic sulfonate-binding protein
Cell Localization:()
Synonyms:PA2595
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68835.1|AE016516_5 (AE016786) periplasmic aliphatic sulfonate-binding protein,
           putative [Pseudomonas putida KT2440]
          Length = 321

 Score =  444 bits (1142), Expect = e-124
 Identities = 225/313 (71%), Positives = 260/313 (83%)

>gb|AAO55311.1| (AE016862) ABC transporter, periplasmic substrate-binding protein,
           aliphatic sulfonates family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 329

 Score =  236 bits (602), Expect = 1e-61
 Identities = 132/315 (41%), Positives = 195/315 (61%), Gaps = 4/315 (1%)

Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  96.7% aligned
Score =  153 bits (388), Expect = 2e-38
Identities = 114/324 (35%), Positives = 145/324 (44%), Gaps = 10/324 (3%)

Genomic Context:
Comment:
ReferenceID:4659
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21805
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33165
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2328_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2328

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3958 PA2595_tr translation of PA2595 318 99.68 99.68 0 1601.0
120277 gb|AAG05983.1|AE004688_5 (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 318 99.68 99.68 0 1601.0
120278 gb|AAN68835.1|AE016516_5 (AE016786) periplasmic aliphatic sulfonate-binding protein, putative [Pseudomonas putida KT2440] 321 70.09 81.30 3 1138.0
3959 PA2596_tr translation of PA2596 330 42.72 56.96 14 642.0
120279 gb|AAG05984.1|AE004688_6 (AE004688) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 330 42.72 56.96 14 642.0
GC ORFID: 45330How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2595Glimmer Score:
Start: 2310555Stop: 2309599
Length: 957
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2595 translation of PA2595Homolog Bit Score 621.0
Other Homologs: t_PA2596 (ORF: BLASTX 249.0), psyr_15may02_Scaffold8_revised_gene7657 (ORF: BLASTX 231.0), t_PA2595 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCAGaCCCTGAGCCTGTTCCTGCTTCTCTGCCTGCTCGTCGGCCAGGCCTGTGCCGACGAGCGCGTG
ACCCTGCGCCTGGCCGACCAGAAGGGCAACATGCGCGCCCAGTTGGAGGCTGCCGGCGCGCTGGACGACCTG
ACCTACGACATCCGCTGGTTCGAATTCCCCGCCGCCGCCGCCCTCGCCGAAGCACTCAATGCCGGTGCGGTG
GATGCCGGCATCATCGGCGACGCGCCATTGCTCTTCGCCCTGGCCGCCGGTGCCCGGCTGAAGGCCATCGCC
GTCGACAAATCCGATCCCTACGGTACCGCCGTGCTGGTGAGAGGGGATTCGCCGCTGCGCTCGGCCAACGAC
CTGAAAGGCCAGCGCATTGCCACCGGGCGCGGTTCCATCGGCCACTTCGTCGCGCTCAAGGCCTTGGCCTCG
GTCGGGCTGGGCGAGAAGGACGTCGAATTCCGCTTCCTCGGCCCGGTGGACGCGAAAATGGCCCTCGCCAAT
GGTTCCGTGGATGCCTGGGCGACCTGGGAGCCCTACACCGCGTTCGCGGAGACCGCCGACAAGGCTCGGGTA
CTGGTCGACGGTCGCGGCCTGTGGGCTGGCAACAGCTTCCTCGCTGCTACCGATAGCGCACTGGCCGACCCG
GCGAAACGCGCCGTGCTGCAGGACTACCTGCAACGCCTGGCCAGCGCCCAGCGCTGGGCGTACCTGCACCTG
GACGAGTATTCGCGAAGCCTGGCGCAGATCATCGGCTTCCCCGAGGACGCCGCGCGCTTGCAGTTCGAACGT
CGGCGCTTGCGTTGGCAGGCGCTGGATGAGCGAACGCTCGGCCAGCAGCAGGAGACCGCCGATTTCTACCAG
GCCCATGGATTGATTCCGCAGCGCCTCGATGTGCGGCCGACCTTCGCCAGCGGCTTTGCGGTCAGGCAGGCG
TCGGATGCGGATATCCGGTAG