ViewGene
Locus Name:
GeneID:
Location:

GeneID:2327
TrivialName: PA14_68670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68670
PAO1 Ortholog Locus:PA5198
Sequence Length:924
Protein Length:307
Start: 6122449
Stop: 6123372
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08583.1|AE004932_10 (AE004932) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 304/307 (99%), Positives = 305/307 (99%)
Sequence:
ATGACCCCTCGTCCCTCCTCCGACCAGACCTGGCAGCCCATCGACGGCCGGGTGGCGCTGATCGCGCCAGCC
TCGGCCATCGCCACCGACGTGCTGGAGGCGACCCTGCGGCAACTGGAAGTGCACGGCGTGGACTACCATCTC
GGCCGCCACGTCGAAGCCCGCTACCGCTACCTCGCCGGGACGGTCGAGCAGCGCCTGGAAGACCTGCACAAC
GCCTTCGACATGCCGGACATCTCCGCGGTCTGGTGCCTGCGCGGCGGCTACGGCTGCGGCCAGTTGCTGCCG
GGCCTGGACTGGGGGCGCCTGCAGACGGCCTCGCCGCGGCCACTGATCGGTTTCTCCGACATCTCGGTGTTG
CTCAGCGCTTTCCACCGCCACGGCCTGCCTGCGATCCACGGCCCGGTGGCCACCGGACTCGGTCTGTCGCCG
CTCAGCGCCCCCCGCGAGCAGCAGGAGCGGCTAGCCTCTCTGGCCTCGGTCAGCCGCTTGCTGGCCGGAATC
GACCATGAACTCCCGGTGCAGCACCTCGGCGGACACAAGCAACGCGTCGAAGGCGCGCTGATCGGCGGCAAC
CTCACCGCCCTGGCCTGCATGGCCGGCACCCTCGGCGGCCTGCACGCCCCGGCGGGGTCGATCCTGGTCCTG
GAGGACGTCGGCGAACCCTACTACCGCCTGGAGCGCAGCCTCTGGCAATTGCTCGAAAGCATCGACGCGCGC
CAGCTCGGCGCGATCTGCCTGGGCTCGTTCACCGATTGCCCGCGCAAGGAAGTCGCCCACAGCCTGGAGCGG
ATCTTCGGCGAATACGCCGCCGCCATCGAGGTGCCGCTCTACCACCACCTGCCCAGCGGGCATGGTGCGCAG
AACCGAGCCTGGCCTTACGGGAAGACCGCGGTGCTCGAGGGAAACCGGTTGCGCTGGTAG
Translation:
MTPRPSSDQTWQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHN
AFDMPDISAVWCLRGGYGCGQLLPGLDWGRLQTASPRPLIGFSDISVLLSAFHRHGLPAIHGPVATGLGLSP
LSAPREQQERLASLASVSRLLAGIDHELPVQHLGGHKQRVEGALIGGNLTALACMAGTLGGLHAPAGSILVL
EDVGEPYYRLERSLWQLLESIDARQLGAICLGSFTDCPRKEVAHSLERIFGEYAAAIEVPLYHHLPSGHGAQ
NRAWPYGKTAVLEGNRLRW*
AnnotationID:2335GeneID:2327
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:23
Gene Name:
Confidence Code:3
GeneProduct:putative carboxypeptidase
Cell Localization:()
Synonyms:PA5198
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1619,pfam02016
Secondary Functional Category(ies):defense mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1619, LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF 
[Defense mechanisms]
CD-Length = 313 residues,  96.8% aligned
Score =  276 bits (707), Expect = 3e-75
Identities = 107/306 (34%), Positives = 155/306 (50%), Gaps = 9/306 (2%)

pfam02016, Peptidase_U61, LD-carboxypeptidase. 
CD-Length = 71 residues, 100.0% aligned
Score = 86.0 bits (213), Expect = 5e-18
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4657




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21803




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34876




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2327_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2327
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3957
                           PA5198_tr
                           translation of PA5198
                           307
                           99.02
                           99.34
                           0
                           1604.0
     

     
     
120276
                           gb|AAG08583.1|AE004932_10
                           (AE004932) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           307
                           99.02
                           99.34
                           0
                           1604.0
     

     






      

          
GC ORFID: 45329How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5198Glimmer Score: 

          
Start: 5386135Stop: 5387058

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5198 translation of PA5198Homolog Bit Score 622.0

          
Other Homologs:  t_PA5198 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCCTCGTCCCTCCTCCGACCAGACCTGGCAGCCCATCGACGGCCGGGTGGCGCTGATCGCGCCAGCC 
TCGGCCATCGCCACCGACGTGCTGGAGGCGACCCTGCGGCAACTGGAAGTGCACGGCGTGGACTACCATCTC 
GGCCGCCACGTCGAAGCCCGCTACCGCTACCTCGCCGGGACGGTCGAGCAGCGCCTGGAAGACCTGCACAAC 
GCCTTCGACATGCCGGACATCTCCGCGGTCTGGTGCCTGCGCGGCGGCTACGGCTGCGGCCAGTTGCTGCCG 
GGCCTGGACTGGGGGCGCCTGCAGACGGCCTCGCCGCGGCCACTGATCGGTTTCTCCGACATCTCGGTGTTG 
CTCAGCGCTTTCCACCGCCACGGCCTGCCTGCGATCCACGGCCCGGTGGCCACCGGACTCGGTCTGTCGCCG 
CTCAGCGCCCCCCGCGAGCAGCAGGAGCGGCTAGCCTCTCTGGCCTCGGTCAGCCGCTTGCTGGCCGGAATC 
GACCATGAACTCCCGGTGCAGCACCTCGGCGGACACAAGCAACGCGTCGAAGGCGCGCTGATCGGCGGCAAC 
CTCACCGCCCTGGCCTGCATGGCCGGCACCCTCGGCGGCCTGCACGCCCCGGCGGGGTCGATCCTGGTCCTG 
GAGGACGTCGGCGAACCCTACTACCGCCTGGAGCGCAGCCTCTGGCAATTGCTCGAAAGCATCGACGCGCGC 
CAGCTCGGCGCGATCTGCCTGGGCTCGTTCACCGATTGCCCGCGCAAGGAAGTCGCCCACAGCCTGGAGCGG 
ATCTTCGGCGAATACGCCGCCGCCATCGAGGTGCCGCTCTACCACCACCTGCCCAGCGGGCATGGTGCGCAG 
AACCGAGCCTGGCCTTACGGGAAGACCGCGGTGCTCGAGGGAAACCGGTTGCGCTGGTAG