ViewGene

Locus Name:
GeneID:
Location:

GeneID:2325
TrivialName: PA14_14170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14170
PAO1 Ortholog Locus:PA3852
Sequence Length:936
Protein Length:311
Start: 1211981
Stop: 1212916
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07239.1|AE004802_8 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/311 (99%), Positives = 310/311 (99%)
Sequence:
ATGTCAGAGCTGATCCTGCATCACTATCCCACTTCGCCCTTCGCCGAGAAGGCGCGCCTGCTGCTCGGTTTC
AAGCAACTGTCCTGGCGCTCGGTGATGATTCCGCCGGTGATGCCCAAGCCGGACCTGGTGGCGCTGACCGGC
GGCTATCGGAAGACCCCGGTGTTGCAGGTCGGCGCCGATGTGTATTGCGATACCGCGTTGATCGCCCGTCGC
CTGGAGCAGGAAAAGGCGGTCCCGGCGCTGTTCCCCGAAGGCCAGGAGATGGTCGCCGCGAGCTTCGCCCAG
TGGGCCGACGCGGTGCTGTTCCAGCACGCGGTAAGCCTGGCGTTCGCCCCGGAGTCCATCGCCGTGCGCTTC
GGCAAGCTGCCGCCGGAATTCCTCAAGGCCTTCATGGCCGATCGCAGCCAGCTATTCAGCGGCGGCAGCGCC
GGCCGCCTGCCGTTGGAACAGGCGCGCCACCAGTGGCCGGCATTCATGGCGCGACTGGAGCGCCAGTTGTCG
CGCGAGGACGGCGACTTCCTGTTCGGCGAAGCGTCCGTCGCCGACTTCGCCGTGGCGCACTGCCTGTGGTTC
CTCAAGGGCACGCCGGTCACCGCGCCGCTGGTCGACGATTACCCGCAGGTGCAGGCCTGGTTGGGCCGGGTG
CTCGGCTTCGGCCATGGCGCGCCAGCCGAGATGAGTGCGGAGGAAGCCCTGGAGGTGGCTCGCGGCAGCCAG
CCCGCGGCATTGCCGGACGAATCCTTCAGCGACCCCAACGGTTTCCGGCCCGGCCAGGCGGTCGCCATCGCC
GCCACCGACTACGGTGTCGACGCGGTACAGGGCGAACTGCTCTTCGCCGGCAGCGAGGAACTCATCCTGCGC
CGCGAAGACCCGCGGGCGGGTACCGTGCATGTGCATTTCCCGCGCCTGGGCTTTCGCATCGAGGCGCGTTGA
Translation:
MSELILHHYPTSPFAEKARLLLGFKQLSWRSVMIPPVMPKPDLVALTGGYRKTPVLQVGADVYCDTALIARR
LEQEKAVPALFPEGQEMVAASFAQWADAVLFQHAVSLAFAPESIAVRFGKLPPEFLKAFMADRSQLFSGGSA
GRLPLEQARHQWPAFMARLERQLSREDGDFLFGEASVADFAVAHCLWFLKGTPVTAPLVDDYPQVQAWLGRV
LGFGHGAPAEMSAEEALEVARGSQPAALPDESFSDPNGFRPGQAVAIAATDYGVDAVQGELLFAGSEELILR
REDPRAGTVHVHFPRLGFRIEAR*
AnnotationID:2333GeneID:2325
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:09
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:PA3852
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD15470.1| (AL646066) PUTATIVE GLUTATHIONE S-TRANSFERASE-RELATED PROTEIN
           [Ralstonia solanacearum]
          Length = 318

 Score =  287 bits (735), Expect = 5e-77
 Identities = 142/311 (45%), Positives = 200/311 (64%), Gaps = 3/311 (0%)
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  99.5% aligned
Score = 69.8 bits (170), Expect = 8e-13
Identities = 65/238 (27%), Positives = 88/238 (36%), Gaps = 31/238 (13%)
Genomic Context:
Comment:
ReferenceID:4653
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21799
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31710
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2325_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2325

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3955 PA3852_tr translation of PA3852 311 99.67 99.67 0 1604.0
120218 gb|AAG07239.1|AE004802_8 (AE004802) hypothetical protein PA3852 [Pseudomonas aeruginosa PAO1] 311 99.67 99.67 0 1604.0
120219 gb|AAO54788.1| (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 311 71.38 82.63 1 1195.0
120220 emb|CAD15470.1| (AL646066) PUTATIVE GLUTATHIONE S-TRANSFERASE-RELATED PROTEIN [Ralstonia solanacearum] 318 44.65 62.89 7 735.0
GC ORFID: 45327How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3852Glimmer Score:
Start: 3741957Stop: 3741022
Length: 936
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3852 translation of PA3852Homolog Bit Score 622.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4396 (ORF: BLASTX 450.0), t_PA3852 (ORF: GLIMMER)
GC ORF Sequence
ATGTCAGAGCTGATCCTGCATCACTATCCCACTTCGCCCTTCGCCGAGAAGGCGCGCCTGCTGCTCGGTTTC
AAGCAACTGTCCTGGCGCTCGGTGATGATTCCGCCGGTGATGCCCAAGCCGGACCTGGTGGCGCTGACCGGC
GGCTATCGGAAGACCCCGGTGTTGCAGGTCGGCGCCGATGTGTATTGCGATACCGCGTTGATCGCCCGTCGC
CTGGAGCAGGAAAAGGCGGTCCCGGCGCTGTTCCCCGAAGGCCAGGAGATGGTCGCCGCGAGCTTCGCCCAG
TGGGCCGACGCGGTGCTGTTCCAGCACGCGGTAAGCCTGGCGTTCGCCCCGGAGTCCATCGCCGTGCGCTTC
GGCAAGCTGCCGCCGGAATTCCTCAAGGCCTTCATGGCCGATCGCAGCCAGCTATTCAGCGGCGGCAGCGCC
GGCCGCCTGCCGTTGGAACAGGCGCGCCACCAGTGGCCGGCATTCATGGCGCGACTGGAGCGCCAGTTGTCG
CGCGAGGACGGCGACTTCCTGTTCGGCGAAGCGTCCGTCGCCGACTTCGCCGTGGCGCACTGCCTGTGGTTC
CTCAAGGGCACGCCGGTCACCGCGCCGCTGGTCGACGATTACCCGCAGGTGCAGGCCTGGTTGGGCCGGGTG
CTCGGCTTCGGCCATGGCGCGCCAGCCGAGATGAGTGCGGAGGAAGCCCTGGAGGTGGCTCGCGGCAGCCAG
CCCGCGGCATTGCCGGACGAATCCTTCAGCGACCCCAACGGTTTCCGGCCCGGCCAGGCGGTCGCCATCGCC
GCCACCGACTACGGTGTCGACGCGGTACAGGGCGAACTGCTCTTCGCCGGCAGCGAGGAACTCATCCTGCGC
CGCGAAGACCCGCGGGCGGGTACCGTGCATGTGCATTTCCCGCGCCTGGGCTTTCGCATCGAGGCGCGTTGA