ViewGene

Locus Name:
GeneID:
Location:

GeneID:2324
TrivialName: PA14_14390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14390
PAO1 Ortholog Locus:PA3836
Sequence Length:978
Protein Length:325
Start: 1228813
Stop: 1227836
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07223.1|AE004801_1 (AE004801) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 324/325 (99%), Positives = 325/325 (100%)
Sequence:
ATGATGCAGGCCTATAAGAATAAATGGTTGCCCCTCAGTGCCCTGGCCCTTGGCATGGCCCTGTCCTTCGGC
GCCAACGCCGACGAGCAGAAGTCGGTGGCCGTGACCGCCATCGTCGAGCACCCGGCGCTGGACGCCGCTCGC
GACGGGGTCAAGGAGGCCCTCCAGGAGGCCGGCTACGAAGACGGCAAGAACCTCAAGTGGCAGTACCAGAGC
GCCCAGGGCAACACCGGCACCGCCGCGCAGATCGCCCGCAAGTTCATCGGCGACAAGCCCGACGTGATCGTC
GGCATCGCCACTCCGTCGGCCCAGGCGCTGGTGGCCGCGACCAAGAGCATCCCGATCGTCTTCAGCACCGTC
ACCGACCCGGTCGGCGCGCACCTGACGCCGAGCTGGGAAGCCTCCGGCACCAACGTCACCGGGGTTTCCGAC
ATGCTCGCGCTGGACAAGCAGATCGAGCTGATCAAGAAAGTGGTGCCGGGCGCCAAGCGCATCGGCATGGTC
TACAACCCGGGCGAAGCCAACTCCGTGGTGGTGGTCAAGGAGCTGAAGGAGCTGCTGCCGAAGATGGGCCTG
AGCCTGGTCGAAGCCTCGGCCCCGCGTTCGGTGGACGTCAGCTCGGCGGCGCGCAGCCTGGTCGGCAAGGTC
GACGCGATCTACACCAACACCGACAACAACGTGGTGTCCGCCTACGAGGCGCTGGTCAAGGTCGGCAACGAC
GCGAAGATCCCGCTGATCGCCTCCGACACCGACAGCGTCAAGCGCGGCGCCATCGCCGCCCTCGGCATCAAC
TACAAGGAGATGGGCAAGCAGACCGGCCGCATGGTGGTGCGCATCCTCAAGGGCGAGAAGCCGGGCGAGATC
AAGCCGGAGACCAGCGACAACCTGCAGCTGTTCGTCAATCCCGGGGCCGCGCAGAAGCAAGGCGTGACCCTG
TCCGACGAACTGCTCAAGTCGGCCGCGGAAGTCATCAAGTAA
Translation:
MMQAYKNKWLPLSALALGMALSFGANADEQKSVAVTAIVEHPALDAARDGVKEALQEAGYEDGKNLKWQYQS
AQGNTGTAAQIARKFIGDKPDVIVGIATPSAQALVAATKSIPIVFSTVTDPVGAHLTPSWEASGTNVTGVSD
MLALDKQIELIKKVVPGAKRIGMVYNPGEANSVVVVKELKELLPKMGLSLVEASAPRSVDVSSAARSLVGKV
DAIYTNTDNNVVSAYEALVKVGNDAKIPLIASDTDSVKRGAIAALGINYKEMGKQTGRMVVRILKGEKPGEI
KPETSDNLQLFVNPGAAQKQGVTLSDELLKSAAEVIK*
AnnotationID:2332GeneID:2324
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:34
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type transport protein, periplasmic c
Cell Localization:()
Synonyms:PA3836
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative export protein
Functional Category Confidence Code:5
COGs:COG2984
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE33848.1| (BX640447) putative exported protein [Bordetella bronchiseptica]
          Length = 324

 Score =  492 bits (1267), Expect = e-138
 Identities = 248/320 (77%), Positives = 287/320 (89%)

>emb|CAE37053.1| (BX640428) putative exported protein [Bordetella parapertussis]
          Length = 324

 Score =  491 bits (1264), Expect = e-138
 Identities = 247/320 (77%), Positives = 287/320 (89%)

>gb|AAN30943.1|AE014493_4 (AE014493) ABC transporter, periplasmic substrate-binding protein,
           putative [Brucella suis 1330]
          Length = 321

 Score =  326 bits (835), Expect = 1e-88
 Identities = 172/320 (53%), Positives = 235/320 (73%), Gaps = 2/320 (0%)
Structural Features:
COG2984, ABC-type uncharacterized transport system, periplasmic component 
             CD-Length = 322 residues, 100.0% aligned
Score =  364 bits (935), Expect = 2e-101
Identities = 190/325 (58%), Positives = 247/325 (76%), Gaps = 3/325 (0%)
Genomic Context:
Comment:
ReferenceID:4651
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21797
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31723
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2324_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2324

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3954 PA3836_tr translation of PA3836 325 99.69 99.99 0 1604.0
120201 gb|AAG07223.1|AE004801_1 (AE004801) hypothetical protein PA3836 [Pseudomonas aeruginosa PAO1] 325 99.69 99.99 0 1604.0
120202 emb|CAE33848.1| (BX640447) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 325 76.61 88.61 1 1266.0
120203 emb|CAE37053.1| (BX640428) putative exported protein [Bordetella parapertussis] 325 76.30 88.61 1 1263.0
120204 emb|CAE42346.1| (BX640417) putative exported protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 325 76.30 88.30 1 1260.0
GC ORFID: 45326How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3836Glimmer Score:
Start: 3725125Stop: 3726102
Length: 978
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3836 translation of PA3836Homolog Bit Score 622.0
Other Homologs: t_PA3836 (ORF: GLIMMER)
GC ORF Sequence
ATGATGCAGGCCTATAAGAATAAATGGTTGCCCCTCAGTGCCCTGGCCCTTGGCATGGCCCTGTCCTTCGGC
GCCAACGCCGACGAGCAGAAGTCGGTGGCCGTGACCGCCATCGTCGAGCACCCGGCGCTGGACGCCGCTCGC
GACGGGGTCAAGGAGGCCCTCCAGGAGGCCGGCTACGAAGACGGCAAGAACCTCAAGTGGCAGTACCAGAGC
GCCCAGGGCAACACCGGCACCGCCGCGCAGATCGCCCGCAAGTTCATCGGCGACAAGCCCGACGTGATCGTC
GGCATCGCCACTCCGTCGGCCCAGGCGCTGGTGGCCGCGACCAAGAGCATCCCGATCGTCTTCAGCACCGTC
ACCGACCCGGTCGGCGCGCACCTGACGCCGAGCTGGGAAGCCTCCGGCACCAACGTCACCGGGGTTTCCGAC
ATGCTCGCGCTGGACAAGCAGATCGAGCTGATCAAGAAAGTGGTGCCGGGCGCCAAGCGCATCGGCATGGTC
TACAACCCGGGCGAAGCCAACTCCGTGGTGGTGGTCAAGGAGCTGAAGGAGCTGCTGCCGAAGATGGGCCTG
AGCCTGGTCGAAGCCTCGGCCCCGCGTTCGGTGGACGTCAGCTCGGCGGCGCGCAGCCTGGTCGGCAAGGTC
GACGCGATCTACACCAACACCGACAACAACGTGGTGTCCGCCTACGAGGCGCTGGTCAAGGTCGGCAACGAC
GCGAAGATCCCGCTGATCGCCTCCGACACCGACAGCGTCAAGCGCGGCGCCATCGCCGCCCTCGGCATCAAC
TACAAGGAGATGGGCAAGCAGACCGGCCGCATGGTGGTGCGCATCCTCAAGGGCGAGAAGCCGGGCGAGATC
AAGCCGGAGACCAGCGACAACCTGCAGCTGTTCGTCAATCCCGGGGCCGCGCAGAAGCAAGGCGTGACCCTG
TCCGACGAACTGCTCAAGTCGGCCGCGGAAGTCATCAAGTAA