ViewGene
Locus Name:
GeneID:
Location:

GeneID:2323
TrivialName: PA14_16600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16600
PAO1 Ortholog Locus:PA3695
Sequence Length:906
Protein Length:301
Start: 1420794
Stop: 1421699
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07083.1|AE004789_3 (AE004789) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 299/301 (99%), Positives = 300/301 (99%)
Sequence:
ATGAAGCGCCTGCTGATCCCGCTGCTGGTACTCGGCGCGCTGTTCCTCGGTGGTTGCAGTTCGCTGCTGTTC
TATCCCGAGCCGGTGGTGCAGATCACCCCGGCGCGCGCCGGGCTGGAGTACCGCGACGTCACCCTGACCACC
GCCGACGGCGTGCGCCTGCGTGCCTGGTGGCTGCCGGCGAAGAAAGGCGTGCCGGTGAAAGGCACCGTGCTC
TACCTGCACGGCAACGGCGGCAACCTGTCCTGGCACCTCGGCGGCACCTGGTGGCTGCCCGCCGAGGGCTAC
CAGGTGCTGATGCTCGACTATCGCGGCTACGGCCAGTCGGAGGGCGAGCCGGGACTGCCGGAGGTCTACCGC
GACATCGACGCGGCGTTCGCCTGGCTCGACCAGGCGCCGGAGGTGAAGGGCACCGAGCGCGTGCTGCTGGGG
CAGAGTCTCGGCGGCGCGCTGGCGATCCACTACCTGGTCGAGCATCCGCAGCGCCAGGGCCAGTTCAAGGCG
CTGGTGTTCGACGGGGTACCGGCGAGCTACCGCGGCATCGCCCGGCACATGCTGGACGGTTCCTGGCTGACC
TGGCCGCTGCAGGTGCCGCTGTCCTGGCTGGTGCCCGACGACGACAGCGCCATCCATTCGGTGGCGCGGCTT
TCTGGCGCACCCATGCTGTTCTTTCACAGTATCGACGATACCATTGTGCCCCTCGAGAACGGCATCGCCCTG
TACCGCCAGGCGCGGCCGCCGAAGGTCCTGCAACTGACCCGAGGCGGCCACGTGCAGACCTTCGCCGAAGCG
ACCTGGCAGGAAGTGATGCTGCGCTTCCTCGACGATCCCCATGGCTTCACCGGCCTGCGCCGGCTGGCCGAA
ATCCCGAACCGCGAATCCGCGAAACCCGAAGGCAATCCATGA
Translation:
MKRLLIPLLVLGALFLGGCSSLLFYPEPVVQITPARAGLEYRDVTLTTADGVRLRAWWLPAKKGVPVKGTVL
YLHGNGGNLSWHLGGTWWLPAEGYQVLMLDYRGYGQSEGEPGLPEVYRDIDAAFAWLDQAPEVKGTERVLLG
QSLGGALAIHYLVEHPQRQGQFKALVFDGVPASYRGIARHMLDGSWLTWPLQVPLSWLVPDDDSAIHSVARL
SGAPMLFFHSIDDTIVPLENGIALYRQARPPKVLQLTRGGHVQTFAEATWQEVMLRFLDDPHGFTGLRRLAE
IPNRESAKPEGNP*
AnnotationID:2331GeneID:2323
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:15
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase, alpha/beta family
Cell Localization:()
Synonyms:PA3695
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative lipoprotein
Functional Category Confidence Code:5
COGs:KOG4391,COG1073
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67121.1|AE016341_4 (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 307

 Score =  438 bits (1126), Expect = e-122
 Identities = 210/286 (73%), Positives = 236/286 (82%), Gaps = 2/286 (0%)

>gb|AAO55024.1| (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 298

 Score =  411 bits (1056), Expect = e-114
 Identities = 186/287 (64%), Positives = 232/287 (80%), Gaps = 1/287 (0%)






 
Structural Features:
KOG4391, Predicted alpha/beta hydrolase BEM46 
CD-Length = 300 residues,  78.0% aligned
Score =  102 bits (255), Expect = 1e-22
Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 16/246 (6%)

COG1073, Hydrolases of the alpha/beta superfamily 
CD-Length = 299 residues,  80.9% aligned
Score = 83.6 bits (205), Expect = 6e-17







   
Genomic Context:






   
Comment:


















    ReferenceID:4649




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21795




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31854




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2323_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2323
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3953
                           PA3695_tr
                           translation of PA3695
                           301
                           99.33
                           99.66
                           0
                           1604.0
     

     
     
120198
                           gb|AAG07083.1|AE004789_3
                           (AE004789) hypothetical protein PA3695 [Pseudomonas aeruginosa PAO1]
                           301
                           99.33
                           99.66
                           0
                           1604.0
     

     
     
120199
                           gb|AAN67121.1|AE016341_4
                           (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
                           311
                           68.48
                           77.49
                           14
                           1120.0
     

     
     
120200
                           gb|AAO55024.1|
                           (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           303
                           62.37
                           78.87
                           7
                           1053.0
     

     






      

          
GC ORFID: 45325How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3695Glimmer Score: 

          
Start: 3533143Stop: 3532238

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3695 translation of PA3695Homolog Bit Score 622.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4594 (ORF: BLASTX 422.0), t_PA3695 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCGCCTGCTGATCCCGCTGCTGGTACTCGGCGCGCTGTTCCTCGGTGGTTGCAGTTCGCTGCTGTTC 
TATCCCGAGCCGGTGGTGCAGATCACCCCGGCGCGCGCCGGGCTGGAGTACCGCGACGTCACCCTGACCACC 
GCCGACGGCGTGCGCCTGCGTGCCTGGTGGCTGCCGGCGAAGAAAGGCGTGCCGGTGAAAGGCACCGTGCTC 
TACCTGCACGGCAACGGCGGCAACCTGTCCTGGCACCTCGGCGGCACCTGGTGGCTGCCCGCCGAGGGCTAC 
CAGGTGCTGATGCTCGACTATCGCGGCTACGGCCAGTCGGAGGGCGAGCCGGGACTGCCGGAGGTCTACCGC 
GACATCGACGCGGCGTTCGCCTGGCTCGACCAGGCGCCGGAGGTGAAGGGCACCGAGCGCGTGCTGCTGGGG 
CAGAGTCTCGGCGGCGCGCTGGCGATCCACTACCTGGTCGAGCATCCGCAGCGCCAGGGCCAGTTCAAGGCG 
CTGGTGTTCGACGGGGTACCGGCGAGCTACCGCGGCATCGCCCGGCACATGCTGGACGGTTCCTGGCTGACC 
TGGCCGCTGCAGGTGCCGCTGTCCTGGCTGGTGCCCGACGACGACAGCGCCATCCATTCGGTGGCGCGGCTT 
TCTGGCGCACCCATGCTGTTCTTTCACAGTATCGACGATACCATTGTGCCCCTCGAGAACGGCATCGCCCTG 
TACCGCCAGGCGCGGCCGCCGAAGGTCCTGCAACTGACCCGAGGCGGCCACGTGCAGACCTTCGCCGAAGCG 
ACCTGGCAGGAAGTGATGCTGCGCTTCCTCGACGATCCCCATGGCTTCACCGGCCTGCGCCGGCTGGCCGAA 
ATCCCGAACCGCGAATCCGCGAAACCCGAAGGCAATCCATGA