ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2321

TrivialName: PA14_32930

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_32930

PAO1 Ortholog Locus: PA2450

Sequence Length: 918

Protein Length: 305

Start: 2880132

Stop: 2881049

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05838.1|AE004672_6 (AE004672) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 301/305 (98%), Positives = 301/305 (98%)

Sequence:

ATGCGCCGACTCTTGCGCCCGGTATTCTGCGCCGCGCTCTTCTGCCTGTACCCAGCGCTGGTCCAGGCTGCC
GCCGAAAGCGAAATCCTCGGCCTGTTCCAGCGCTGGCAGGCCGCCCACGGGCAGCGCAGCGGCAAGGCCCTG
GAAGGGGTCTATGCGCCGCGCCTGGACTACTATGGCCGCGCGCAGACGCGCGAGCGCACCCTCTCCGCCAAG
CAGGCCTTCTTCGCCCGCCATCCCGACTTCGAGCAGCGCATCGTCGCTGCGCCGCAGATCGTGCCGGGCGAC
CAGGAAGGCCGCTACGAGGTGCGCTTCGTCAAGCAGGTACGCCTCGACGGACGCCTGCGCAACTATCCGGGG
CTGCTCCTGGCCGAGCGCGCCGGGCCGGGCGATACCTGGCGCTTCGTCGGCGAGAGCGACGAGATCACCCGC
TACGCCGTCGACCCGCGGTACACCCCGCTGGCTCGCGGCCGCTTCGCCGGTACCGAAGCGGATTTCGCCTGG
GTAGTGGCCCACGCGCCGAACAGCGCCGCCTTGTGCGACGAATACGAGGATTGCCGCTGCGACCTCTGGAGC
GCCGACGCGCGCGTCCCGCCCAAGCCGCTGGGCAGTTGCACCGGCGCGGTGCTCAGCGTCCTCGGCGGCCTC
GACGACAGCGGCCGCGAGCGCCTGCAACTGCTGCGTACCTGGTGGACCAGCACCTGGACCAAGTCGTCGCTG
CTGGAAATCCGCGATGGCCAGTGGGTGCGGGTGCTGCCGGACATCTCCACCACCTGGGACGATGCCGAGGCC
GAGCTGGTGCTGTACAAGGCCGACCCGCAGCAGCCGGGCCGAGTGCTGGTGACCGAAACCGTGATGGACGAC
GAGGGCGACTGGAGCCACCACACCCGCAGCGAGACGCTGCGCCCCGTACCCTGA

Translation:

MRRLLRPVFCAALFCLYPALVQAAAESEILGLFQRWQAAHGQRSGKALEGVYAPRLDYYGRAQTRERTLSAK
QAFFARHPDFEQRIVAAPQIVPGDQEGRYEVRFVKQVRLDGRLRNYPGLLLAERAGPGDTWRFVGESDEITR
YAVDPRYTPLARGRFAGTEADFAWVVAHAPNSAALCDEYEDCRCDLWSADARVPPKPLGSCTGAVLSVLGGL
DDSGRERLQLLRTWWTSTWTKSSLLEIRDGQWVRVLPDISTTWDDAEAELVLYKADPQQPGRVLVTETVMDD
EGDWSHHTRSETLRPVP*

AnnotationID:2329 GeneID:2321

AnnotatorUID: danlee

Modification Date/Time: 2004-03-08 14:02:23

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA2450

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gb|AAG05838.1|AE004672_6  (AE004672) hypothetical protein [P...   622   e-178

>gb|AAG05838.1|AE004672_6 (AE004672) hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 305

 Score =  622 bits (1604), Expect = e-178
 Identities = 301/305 (98%), Positives = 301/305 (98%)

PA2450

Structural Features:

Genomic Context:

Comment:

ReferenceID:4645

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21791

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2321

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3951 PA2450_tr translation of PA2450 305 98.68 98.68 0 1604.0

120184 gb|AAG05838.1|AE004672_6 (AE004672) hypothetical protein PA2450 [Pseudomonas aeruginosa PAO1] 305 98.68 98.68 0 1604.0

GC ORFID: `45323`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2450`	Glimmer Score:
Start: `2073792`	Stop: `2072875`
Length: `918`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2450 translation of PA2450`	Homolog Bit Score `622.0`
Other Homologs: `t_PA2450 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGCCGACTCTTGCGCCCGGTATTCTGCGCCGCGCTCTTCTGCCTGTACCCAGCGCTGGTCCAGGCTGCC GCCGAAAGCGAAATCCTCGGCCTGTTCCAGCGCTGGCAGGCCGCCCACGGGCAGCGCAGCGGCAAGGCCCTG GAAGGGGTCTATGCGCCGCGCCTGGACTACTATGGCCGCGCGCAGACGCGCGAGCGCACCCTCTCCGCCAAG CAGGCCTTCTTCGCCCGCCATCCCGACTTCGAGCAGCGCATCGTCGCTGCGCCGCAGATCGTGCCGGGCGAC CAGGAAGGCCGCTACGAGGTGCGCTTCGTCAAGCAGGTACGCCTCGACGGACGCCTGCGCAACTATCCGGGG CTGCTCCTGGCCGAGCGCGCCGGGCCGGGCGATACCTGGCGCTTCGTCGGCGAGAGCGACGAGATCACCCGC TACGCCGTCGACCCGCGGTACACCCCGCTGGCTCGCGGCCGCTTCGCCGGTACCGAAGCGGATTTCGCCTGG GTAGTGGCCCACGCGCCGAACAGCGCCGCCTTGTGCGACGAATACGAGGATTGCCGCTGCGACCTCTGGAGC GCCGACGCGCGCGTCCCGCCCAAGCCGCTGGGCAGTTGCACCGGCGCGGTGCTCAGCGTCCTCGGCGGCCTC GACGACAGCGGCCGCGAGCGCCTGCAACTGCTGCGTACCTGGTGGACCAGCACCTGGACCAAGTCGTCGCTG CTGGAAATCCGCGATGGCCAGTGGGTGCGGGTGCTGCCGGACATCTCCACCACCTGGGACGATGCCGAGGCC GAGCTGGTGCTGTACAAGGCCGACCCGCAGCAGCCGGGCCGAGTGCTGGTGACCGAAACCGTGATGGACGAC GAGGGCGACTGGAGCCACCACACCCGCAGCGAGACGCTGCGCCCCGTACCCTGA