ViewGene
Locus Name:
GeneID:
Location:

GeneID:232
TrivialName: PA14_59540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59540
PAO1 Ortholog Locus:
Sequence Length:2250
Protein Length:749
Start: 5297117
Stop: 5299366
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84188.1| (AY273869) plasmid related protein [Pseudomonas aeruginosa]
Identities = 749/749 (100%), Positives = 749/749 (100%)
Sequence:
ATGAACGCTCTGACCCAACCGGCCGCCCTCGCCGCCTCCCACCTGAACATCAACCTGACCGACTTCATCGAC
GAGTTCGGCGACGAGCTCCTGGAGTCGCTCAATCGCTCCAACCCCCCGGTCTATACCGGCTCCGTCAACGCT
CACCGCCAGTTGGTGATGGACCGACTCAAGCGCAAGCCCTTCGCGGCCCAGGCCGAGGTCGTCCAGGCCATC
ACCGCCCTGCTGCTGGACCGTAACGAGCAGGCCGGAATCATCAACGCCGAGATGGGCACCGGGAAAACCATG
ATGGCCATCGCTGTCGCAGCGGTCATGCACGCCGCCGGCTATCGCCGGACCCTGGTCGTCTCTCCGCCGCAC
CTGGTCTACAAGTGGCGCCGCGAGATCCTGGAGACCATCCCAGCCGCCCGCGTCTGGGTACTCAATGGCCCA
GATACTCTACTCAAGCTGCTCAAGCTGCGAGATCAGATGGGCGACGCCTACGACGGGCGCCAGGAGTTCTTC
ATCCTCGGCCGCGTGCGGATGCGGATGGGTTTCCACTGGCGGCTCGCCTGCTGGAAGAAACGCGCCGCCGGC
GGCCAACTGCTCGCTGCGTGCCCGGATTGCGGACAGGTCCTCGAGGACCTGGAAGGCAACCTGGTCACGGTG
GAGGAGTTCGAGCGTGGTGACCGTCGACGTACCTGTTCCTCCTGCCGTGGGGCGCTCTGGACGCTGATCCGA
CCAGGCAAGCCCGACGGCGGCAACCGGCGCGCAACGATTCTCAAGTCGATGTGCCGGATACCAACCATCGGC
CCGGTCAGGGCGGAGCGCCTGCTGAACGACTTCGGCGAGGACTTCCTGGCCACGATGTTGGTGGACAACGTC
TCGGAGTTCATCAACCTGATGGACGCCAAGGGCAACTTCGTCTTCAGCGATCGGCAGGCCAAACGCATGGAG
CGATCGATGGCAAACATCGAGTTCGGCTTCGGTGAAGGCGGCTACCAACCGACCGAGTTCATCAAGCGCTAC
CTACCTGATGGCTACTTCGACCTGCTGGTGCTGGACGAGGGACATGAGTACAAGAACAGCGGCTCGGCCCAG
GGCCAGGCCATGGGCGTTCTCGCAGCCAAGGCACGGAAAACCGTGCTGCTGACCGGAACGCTCATGGGCGGC
TACGCCGACGATCTGTTCTATCTCCTGTTCCGCATCCTCACCCAGCGCATGATCGAGGACGGCTATCGGCCC
AACGCGCGCGGCAGCATGGCTCCCGCAGCCATGTCGTTCATGCGCGACCACGGTGTGCTCAAGGATATCTAC
ACCGAGCGCGACGGTGATTCGCACAAGACAGCGCGGGGCAAGAAGCTCTCGGTACGCACGGTGAAGGCTCCC
GGCTTCGGCCCAAAGGGCATCCACCGCTTCGTATTGCCGTTCACCGTGTTCCTGAAGCTCAAGGATATTGGT
GGCAACGTACTGCCCGACTACCAGGAGGAGTTCATCGACGTGCCCATGGCGCCTGAGCAGGCTTCGGCCTAT
CAGCGCCTGGCGGCCACGCTGACAGCGGAGCTCCGCCAGGCTCTGGCGCGACGAGATACCACGCTCCTGGGC
GTGGTCCTCAACGTGCTGCTGGCTTGGCCGGACTGCTGTTTCCGACCGGAGATCGTCAAGCATCCGCGAACC
CGGGACACACTGGCCTTCGTGCCAGCGATCTTCGGTGACGAGCAGTTGATACCCAAGGAGCAGGTGCTGGTG
GACCTCTGCTTCGAGGAGAAAGCGAAGGGCCGCAAGGTTCTGGCATACACCGTCTACAGCGGGACGCGCGAC
ACCACGTCCAGGCTGAAGAAAGTGCTCGAGCAATCCGGGCTGAAGGTGGCAGTGCTACGTGCTTCGGTCGAT
ACCGCTCGACGCGAGGATTGGATCCTCGACCAGGTCGATCGCGGCATCGATGTGCTGATCACCAACCCGGAG
CTGGTGAAGACCGGGCTGGACTTGCTCGACTTCCCGACCATCGCGTTCCTGCAAACGGGCTACAACGTGTAC
ACCCTGCAGCAGGCCGCGCGGCGGTCGTGGCGGATCGGGCAGAAGCACCCGGTGAGGGTGGTGTTCTTCGGC
TACGCCGGCAGCTCGCAGATCACCTGCTTACAGCTGATGGCCAAGAAGATCGCTGTGGCTCAGAGCACGTCG
GGAGACGTTCCCGAGTCAGGTCTCGACTCGTTGAACCAGGATGGGGATTCTGTGGAGATGGCGTTGGCACGA
CAACTCATCGCAGCATGA
Translation:
MNALTQPAALAASHLNINLTDFIDEFGDELLESLNRSNPPVYTGSVNAHRQLVMDRLKRKPFAAQAEVVQAI
TALLLDRNEQAGIINAEMGTGKTMMAIAVAAVMHAAGYRRTLVVSPPHLVYKWRREILETIPAARVWVLNGP
DTLLKLLKLRDQMGDAYDGRQEFFILGRVRMRMGFHWRLACWKKRAAGGQLLAACPDCGQVLEDLEGNLVTV
EEFERGDRRRTCSSCRGALWTLIRPGKPDGGNRRATILKSMCRIPTIGPVRAERLLNDFGEDFLATMLVDNV
SEFINLMDAKGNFVFSDRQAKRMERSMANIEFGFGEGGYQPTEFIKRYLPDGYFDLLVLDEGHEYKNSGSAQ
GQAMGVLAAKARKTVLLTGTLMGGYADDLFYLLFRILTQRMIEDGYRPNARGSMAPAAMSFMRDHGVLKDIY
TERDGDSHKTARGKKLSVRTVKAPGFGPKGIHRFVLPFTVFLKLKDIGGNVLPDYQEEFIDVPMAPEQASAY
QRLAATLTAELRQALARRDTTLLGVVLNVLLAWPDCCFRPEIVKHPRTRDTLAFVPAIFGDEQLIPKEQVLV
DLCFEEKAKGRKVLAYTVYSGTRDTTSRLKKVLEQSGLKVAVLRASVDTARREDWILDQVDRGIDVLITNPE
LVKTGLDLLDFPTIAFLQTGYNVYTLQQAARRSWRIGQKHPVRVVFFGYAGSSQITCLQLMAKKIAVAQSTS
GDVPESGLDSLNQDGDSVEMALARQLIAA*
AnnotationID:242GeneID:232
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 11:11:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37096.1| (AE011861) plasmid-related protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 766

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 519/748 (69%), Positives = 603/748 (80%), Gaps = 4/748 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17609




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:232
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
22734
                           gb|AAP84188.1|
                           (AY273869) plasmid related protein [Pseudomonas aeruginosa]
                           749
                           99.99
                           99.99
                           0
                           3855.0
     

     
     
22735
                           gb|AAN62165.1|AF440523_72
                           (AF440523) conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
                           768
                           68.61
                           79.68
                           28
                           2725.0
     

     
     
22736
                           emb|CAE92929.1|
                           (AJ617740) putative DNA/RNA helicase [Pseudomonas putida]
                           768
                           68.61
                           79.68
                           28
                           2721.0
     

     
     
22737
                           gb|AAM37096.1|
                           (AE011861) plasmid-related protein [Xanthomonas axonopodis pv. citri str. 306]
                           769
                           67.49
                           78.41
                           23
                           2682.0
     

     
     
22738
                           gb|AAN62302.1|AF440524_89
                           (AF440524) conserved hypothetical plasmid protein [Pseudomonas aeruginosa]
                           759
                           67.19
                           79.97
                           12
                           2630.0
     

     






      

          
GC ORFID: 43234How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL063Glimmer Score: 

          
Start: 4560796Stop: 4563045

          
Length: 2250


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL063 749 Homolog: ORF8 / Plasmid-related protein / X. axonopodis pv. citri / 306 (AAM37096) translation of RL063Homolog Bit Score 1489.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1627 (ORF: BLASTX 1300.0), t_RL063 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCTCTGACCCAACCGGCCGCCCTCGCCGCCTCCCACCTGAACATCAACCTGACCGACTTCATCGAC 
GAGTTCGGCGACGAGCTCCTGGAGTCGCTCAATCGCTCCAACCCCCCGGTCTATACCGGCTCCGTCAACGCT 
CACCGCCAGTTGGTGATGGACCGACTCAAGCGCAAGCCCTTCGCGGCCCAGGCCGAGGTCGTCCAGGCCATC 
ACCGCCCTGCTGCTGGACCGTAACGAGCAGGCCGGAATCATCAACGCCGAGATGGGCACCGGGAAAACCATG 
ATGGCCATCGCTGTCGCAGCGGTCATGCACGCCGCCGGCTATCGCCGGACCCTGGTCGTCTCTCCGCCGCAC 
CTGGTCTACAAGTGGCGCCGCGAGATCCTGGAGACCATCCCAGCCGCCCGCGTCTGGGTACTCAATGGCCCA 
GATACTCTACTCAAGCTGCTCAAGCTGCGAGATCAGATGGGCGACGCCTACGACGGGCGCCAGGAGTTCTTC 
ATCCTCGGCCGCGTGCGGATGCGGATGGGTTTCCACTGGCGGCTCGCCTGCTGGAAGAAACGCGCCGCCGGC 
GGCCAACTGCTCGCTGCGTGCCCGGATTGCGGACAGGTCCTCGAGGACCTGGAAGGCAACCTGGTCACGGTG 
GAGGAGTTCGAGCGTGGTGACCGTCGACGTACCTGTTCCTCCTGCCGTGGGGCGCTCTGGACGCTGATCCGA 
CCAGGCAAGCCCGACGGCGGCAACCGGCGCGCAACGATTCTCAAGTCGATGTGCCGGATACCAACCATCGGC 
CCGGTCAGGGCGGAGCGCCTGCTGAACGACTTCGGCGAGGACTTCCTGGCCACGATGTTGGTGGACAACGTC 
TCGGAGTTCATCAACCTGATGGACGCCAAGGGCAACTTCGTCTTCAGCGATCGGCAGGCCAAACGCATGGAG 
CGATCGATGGCAAACATCGAGTTCGGCTTCGGTGAAGGCGGCTACCAACCGACCGAGTTCATCAAGCGCTAC 
CTACCTGATGGCTACTTCGACCTGCTGGTGCTGGACGAGGGACATGAGTACAAGAACAGCGGCTCGGCCCAG 
GGCCAGGCCATGGGCGTTCTCGCAGCCAAGGCACGGAAAACCGTGCTGCTGACCGGAACGCTCATGGGCGGC 
TACGCCGACGATCTGTTCTATCTCCTGTTCCGCATCCTCACCCAGCGCATGATCGAGGACGGCTATCGGCCC 
AACGCGCGCGGCAGCATGGCTCCCGCAGCCATGTCGTTCATGCGCGACCACGGTGTGCTCAAGGATATCTAC 
ACCGAGCGCGACGGTGATTCGCACAAGACAGCGCGGGGCAAGAAGCTCTCGGTACGCACGGTGAAGGCTCCC 
GGCTTCGGCCCAAAGGGCATCCACCGCTTCGTATTGCCGTTCACCGTGTTCCTGAAGCTCAAGGATATTGGT 
GGCAACGTACTGCCCGACTACCAGGAGGAGTTCATCGACGTGCCCATGGCGCCTGAGCAGGCTTCGGCCTAT 
CAGCGCCTGGCGGCCACGCTGACAGCGGAGCTCCGCCAGGCTCTGGCGCGACGAGATACCACGCTCCTGGGC 
GTGGTCCTCAACGTGCTGCTGGCTTGGCCGGACTGCTGTTTCCGACCGGAGATCGTCAAGCATCCGCGAACC 
CGGGACACACTGGCCTTCGTGCCAGCGATCTTCGGTGACGAGCAGTTGATACCCAAGGAGCAGGTGCTGGTG 
GACCTCTGCTTCGAGGAGAAAGCGAAGGGCCGCAAGGTTCTGGCATACACCGTCTACAGCGGGACGCGCGAC 
ACCACGTCCAGGCTGAAGAAAGTGCTCGAGCAATCCGGGCTGAAGGTGGCAGTGCTACGTGCTTCGGTCGAT 
ACCGCTCGACGCGAGGATTGGATCCTCGACCAGGTCGATCGCGGCATCGATGTGCTGATCACCAACCCGGAG 
CTGGTGAAGACCGGGCTGGACTTGCTCGACTTCCCGACCATCGCGTTCCTGCAAACGGGCTACAACGTGTAC 
ACCCTGCAGCAGGCCGCGCGGCGGTCGTGGCGGATCGGGCAGAAGCACCCGGTGAGGGTGGTGTTCTTCGGC 
TACGCCGGCAGCTCGCAGATCACCTGCTTACAGCTGATGGCCAAGAAGATCGCTGTGGCTCAGAGCACGTCG 
GGAGACGTTCCCGAGTCAGGTCTCGACTCGTTGAACCAGGATGGGGATTCTGTGGAGATGGCGTTGGCACGA 
CAACTCATCGCAGCATGA