ViewGene
Locus Name:
GeneID:
Location:

GeneID:2319
TrivialName: PA14_51380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51380
PAO1 Ortholog Locus:PA1000
Sequence Length:906
Protein Length:301
Start: 4566982
Stop: 4566077
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04389.1|AE004532_13 (AE004532) Quinolone signal response protein [Pseudomonas aeruginosa PAO1]
Identities = 301/301 (100%), Positives = 301/301 (100%)
Sequence:
ATGTTGAGGCTTTCGGCTCCCGGTCAACTGGATGATGACCTGTGCCTGTTGGGGGACGTCCAGGTGCCGGTG
TTTCTGCTGCGTCTCGGTGAGGCGAGCTGGGCGCTGGTTGAAGGAGGGATCAGCCGGGATGCCGAATTGGTT
TGGGCGGACCTGTGCCGCTGGGTCGCCGATCCGTCCCAGGTGCACTACTGGCTGATCACCCACAAGCACTAC
GACCACTGCGGCCTGCTGCCCTACCTGTGTCCGCGGCTGCCGAACGTACAGGTCCTGGCGTCCGAGCGGACC
TGCCAGGCCTGGAAGTCGGAAAGCGCGGTGCGGGTGGTCGAGCGCTTGAACCGGCAACTGTTGCGTGCGGAG
CAGCGGTTGCCCGAGGCCTGTGCCTGGGACGCTCTGCCGGTTCGCGCGGTGGCCGACGGCGAGTGGCTGGAG
CTGGGACCGCGGCATCGCCTGCAGGTCATAGAGGCCCACGGCCACAGCGACGATCACGTGGTTTTCTACGAC
GTGCGACGCCGACGCCTGTTCTGCGGCGATGCCCTGGGCGAGTTCGACGAGGCAGAGGGGGTGTGGCGGCCG
CTGGTGTTCGACGACATGGAGGCTTACCTGGAGTCCCTGGAACGTCTGCAGCGTCTGCCGACCCTGCTGCAA
CTGATCCCGGGACACGGCGGCCTGCTGCGGGGGCGGCTGGCCGCGGATGGGGCCGAGTCGGCCTATACCGAG
TGTCTGCGCCTGTGCCGGCGGTTGCTCTGGCGCCAGTCCATGGGCGAGTCCCTCGACGAACTGAGCGAGGAG
CTGCACCGCGCCTGGGGTGGGCAGAGCGTCGACTTCCTGCCCGGCGAACTGCACCTGGGGAGCATGCGCCGG
ATGCTGGAGATTCTCTCCCGCCAGGCGCTGCCTCTGGACTGA
Translation:
MLRLSAPGQLDDDLCLLGDVQVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHY
DHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLE
LGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQ
LIPGHGGLLRGRLAADGAESAYTECLRLCRRLLWRQSMGESLDELSEELHRAWGGQSVDFLPGELHLGSMRR
MLEILSRQALPLD*
AnnotationID:2327GeneID:2319
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 13:01:36
Gene Name:pqsE
Confidence Code:1
GeneProduct:Quinolone signal response protein
Cell Localization:(1) Cytoplasmic
Synonyms:PA1000
Cell Localization Confidence Code:3
MolecularFunction:required for phenazine, and cyanide production; may have a role in the cellular response to PQS 
Functional Category:(21) Quinolone signal response
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0491, GloB, Zn-dependent hydrolases, including glyoxylases. Score: 86.1, 4e-18
pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily. Score: 71.9, 9e-14







   
Genomic Context:
part of pqsABCDE operon 






   
Comment:


















    ReferenceID:4641




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32105




  
Author/Investigator(s):
        Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C.





  
Title:
        Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.




  
PubMed:
        12426334


MedLine:
        




    
Source:
J Bacteriol. 2002 Dec;184(23):6472-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2319
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3949
                           PA1000_tr
                           translation of PA1000
                           301
                           99.99
                           99.99
                           0
                           1605.0
     

     
     
120163
                           gb|AAG04389.1|AE004532_13
                           (AE004532) Quinolone signal response protein [Pseudomonas aeruginosa PAO1]
                           301
                           99.99
                           99.99
                           0
                           1605.0
     

     
     
120164
                           gb|AAA88447.1|
                           (M33810) unknown protein [Pseudomonas aeruginosa]
                           301
                           99.99
                           99.99
                           0
                           1605.0
     

     
     
120165
                           gb|AAA88450.1|
                           (M33811) unknown protein [Pseudomonas aeruginosa]
                           301
                           31.22
                           31.22
                           207
                           486.0
     

     






      

          
GC ORFID: 45321How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1000Glimmer Score: 

          
Start: 386925Stop: 387830

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1000 translation of PA1000Homolog Bit Score 622.0

          
Other Homologs:  t_PA1000 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGAGGCTTTCGGCTCCCGGTCAACTGGATGATGACCTGTGCCTGTTGGGGGACGTCCAGGTGCCGGTG 
TTTCTGCTGCGTCTCGGTGAGGCGAGCTGGGCGCTGGTTGAAGGAGGGATCAGCCGGGATGCCGAATTGGTT 
TGGGCGGACCTGTGCCGCTGGGTCGCCGATCCGTCCCAGGTGCACTACTGGCTGATCACCCACAAGCACTAC 
GACCACTGCGGCCTGCTGCCCTACCTGTGTCCGCGGCTGCCGAACGTACAGGTCCTGGCGTCCGAGCGGACC 
TGCCAGGCCTGGAAGTCGGAAAGCGCGGTGCGGGTGGTCGAGCGCTTGAACCGGCAACTGTTGCGTGCGGAG 
CAGCGGTTGCCCGAGGCCTGTGCCTGGGACGCTCTGCCGGTTCGCGCGGTGGCCGACGGCGAGTGGCTGGAG 
CTGGGACCGCGGCATCGCCTGCAGGTCATAGAGGCCCACGGCCACAGCGACGATCACGTGGTTTTCTACGAC 
GTGCGACGCCGACGCCTGTTCTGCGGCGATGCCCTGGGCGAGTTCGACGAGGCAGAGGGGGTGTGGCGGCCG 
CTGGTGTTCGACGACATGGAGGCTTACCTGGAGTCCCTGGAACGTCTGCAGCGTCTGCCGACCCTGCTGCAA 
CTGATCCCGGGACACGGCGGCCTGCTGCGGGGGCGGCTGGCCGCGGATGGGGCCGAGTCGGCCTATACCGAG 
TGTCTGCGCCTGTGCCGGCGGTTGCTCTGGCGCCAGTCCATGGGCGAGTCCCTCGACGAACTGAGCGAGGAG 
CTGCACCGCGCCTGGGGTGGGCAGAGCGTCGACTTCCTGCCCGGCGAACTGCACCTGGGGAGCATGCGCCGG 
ATGCTGGAGATTCTCTCCCGCCAGGCGCTGCCTCTGGACTGA