ViewGene
Locus Name:
GeneID:
Location:

GeneID:2318
TrivialName: PA14_05300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05300
PAO1 Ortholog Locus:PA0406
Sequence Length:960
Protein Length:319
Start: 463088
Stop: 462129
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03795.1|AE004477_12 (AE004477) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 318/319 (99%), Positives = 318/319 (99%)
Sequence:
GTGCGTCATAGACTTTTCCGCCCCCCATCGGCAGACTTCGCCCCACGCCAGCCACCACGATCCGCAATGAAC
GCCGCCGTCCTCAAGTCCCCCTCCGCCGCTGCCGGCGTCCGCCCGGCGGACCGTTTGGGCTTCACCCTGTTC
ATCGCAGCCATCCTGCACGTCGCCTTCATCCTCGGGGTGGGCTTCTCCATGCCCGCGCCGAGCCAGATCAGC
AAGACCCTGGAAATCACCCTAGCCACCTTCAAGAGCGACAAGGCGCCGGAGAAGGCCGACTACCTCGCGCAG
ATGAACCAGCAGGGCAGCGGTACCCTGGAGCACAAGGCCGCGCCGAAGACCACCGAGGTCGCGCCGTTCCAG
GACAACCAGGTGAAGAAAGTCGCGCCGCCGGCTACGCCGAAGCAGGCCAGGAGCGAAGAGGCGCCCAAGGCC
GCGGTGACCACCACCCGCCAGCGCCAGCAGAAGGCACCGAGCAAGACCCAGGCACAGAAGGCCGAGCAGGTC
GCCAAGCCGGCGCCGCATTTCGACTCAACCCAGCTGTCGGCGGAAATCGCCAGCCTCGAGGCCGACCTGGCC
AAGGAGCAGCAGGCCTACGCCAAGCGCCCGCGCATCCACCGCCTGAGCGCCGCCTCGACCATGCGCGACAAG
GGCGCCTGGTACAAGGAAGACTGGCGCAAGAAGATCGAACGCATCGGCAACCTCAACTACCCCGACGAGGCC
CGCCGGCAGAAGCTCTACGGCAGCCTGCGACTGCTGGTGTCGATCAACCGCGACGGCACCATCTACGAGGTG
CAGGTGCTGGAGTCTTCCGGCGAGCCGATCCTCGACCAGGCCGCCCAGCGCATCGTCCGCCTGGCCGCGCCC
TATGCGCCGTTCAGCGGCGACCTGGCCGACATCGACCGGCTGGAGATCATCCGTACCTGGCGCTTCGAACGC
GGCGACCGGCTGTCCAGCAAGTAG
Translation:
MRHRLFRPPSADFAPRQPPRSAMNAAVLKSPSAAAGVRPADRLGFTLFIAAILHVAFILGVGFSMPAPSQIS
KTLEITLATFKSDKAPEKADYLAQMNQQGSGTLEHKAAPKTTEVAPFQDNQVKKVAPPATPKQARSEEAPKA
AVTTTRQRQQKAPSKTQAQKAEQVAKPAPHFDSTQLSAEIASLEADLAKEQQAYAKRPRIHRLSAASTMRDK
GAWYKEDWRKKIERIGNLNYPDEARRQKLYGSLRLLVSINRDGTIYEVQVLESSGEPILDQAAQRIVRLAAP
YAPFSGDLADIDRLEIIRTWRFERGDRLSSK*
AnnotationID:2326GeneID:2318
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 08:08:28
Gene Name:
Confidence Code:3
GeneProduct:putative tonB domain protein
Cell Localization:()
Synonyms:PA0406
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0810
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58464.1| (AE016874) tonB domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 297

 Score =  400 bits (1028), Expect = e-111
 Identities = 198/286 (69%), Positives = 238/286 (83%)








 
Structural Features:
COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes 
[Cell envelope biogenesis, outer membrane]
CD-Length = 244 residues,  96.7% aligned
Score = 76.7 bits (188), Expect = 3e-15
Identities = 54/269 (20%), Positives = 91/269 (33%), Gaps = 33/269 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14567




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21785




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33730




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2318_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2318
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3948
                           PA0406_tr
                           translation of PA0406
                           319
                           99.68
                           99.68
                           0
                           1607.0
     

     
     
120160
                           gb|AAG03795.1|AE004477_12
                           (AE004477) hypothetical protein PA0406 [Pseudomonas aeruginosa PAO1]
                           319
                           99.37
                           99.68
                           0
                           1604.0
     

     
     
120161
                           gb|AAO58464.1|
                           (AE016874) tonB domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           319
                           63.00
                           75.86
                           22
                           1023.0
     

     
     
120162
                           gb|AAN70560.1|AE016699_1
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           325
                           62.46
                           76.30
                           30
                           1027.0
     

     






      

          
GC ORFID: 45320How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0406Glimmer Score: 

          
Start: 6264430Stop: 6263471

          
Length: 960


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0406 translation of PA0406Homolog Bit Score 623.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3710 (ORF: BLASTX 404.0), t_PA0406 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGTCATAGACTTTTCCGCCCCCCATCGGCAGACTTCGCCCCACGCCAGCCACCACGATCCGCAATGAAC 
GCCGCCGTCCTCAAGTCCCCCTCCGCCGCTGCCGGCGTCCGCCCGGCGGACCGTTTGGGCTTCACCCTGTTC 
ATCGCAGCCATCCTGCACGTCGCCTTCATCCTCGGGGTGGGCTTCTCCATGCCCGCGCCGAGCCAGATCAGC 
AAGACCCTGGAAATCACCCTAGCCACCTTCAAGAGCGACAAGGCGCCGGAGAAGGCCGACTACCTCGCGCAG 
ATGAACCAGCAGGGCAGCGGTACCCTGGAGCACAAGGCCGCGCCGAAGACCACCGAGGTCGCGCCGTTCCAG 
GACAACCAGGTGAAGAAAGTCGCGCCGCCGGCTACGCCGAAGCAGGCCAGGAGCGAAGAGGCGCCCAAGGCC 
GCGGTGACCACCACCCGCCAGCGCCAGCAGAAGGCACCGAGCAAGACCCAGGCACAGAAGGCCGAGCAGGTC 
GCCAAGCCGGCGCCGCATTTCGACTCAACCCAGCTGTCGGCGGAAATCGCCAGCCTCGAGGCCGACCTGGCC 
AAGGAGCAGCAGGCCTACGCCAAGCGCCCGCGCATCCACCGCCTGAGCGCCGCCTCGACCATGCGCGACAAG 
GGCGCCTGGTACAAGGAAGACTGGCGCAAGAAGATCGAACGCATCGGCAACCTCAACTACCCCGACGAGGCC 
CGCCGGCAGAAGCTCTACGGCAGCCTGCGACTGCTGGTGTCGATCAACCGCGACGGCACCATCTACGAGGTG 
CAGGTGCTGGAGTCTTCCGGCGAGCCGATCCTCGACCAGGCCGCCCAGCGCATCGTCCGCCTGGCCGCGCCC 
TATGCGCCGTTCAGCGGCGACCTGGCCGACATCGACCGGCTGGAGATCATCCGTACCTGGCGCTTCGAACGC 
GGCGACCGGCTGTCCAGCAAGTAG