ViewGene
Locus Name:
GeneID:
Location:

GeneID:2317
TrivialName: PA14_42770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42770
PAO1 Ortholog Locus:PA1680
Sequence Length:984
Protein Length:327
Start: 3804043
Stop: 3805026
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05069.1|AE004595_8 (AE004595) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 321/327 (98%), Positives = 325/327 (99%)
Sequence:
ATGAAGACCTCCATGCCGCGCGCCCTCCTCGCCCTGTTCTGCCTGCTCGCCAGCCTGGCCCACGCCGCTCCC
AACAGCATCCTGCACCGCCCCTACGACCTGGACACCGGGCACGGCGTGCTGCGCGGCTCCTTGCTGCTGCCG
CGCAGCGCCGTGCCGCCGCCGGTGGTCCTGCTGGTCGCCGGCTCCGGTCCCACCGACCGCGACGGCAACAAC
CCCTTCGGCGGCAACAACCGCTACCTGCTGCGTCTCGCCGAGGCCCTGGCCGAACGCGGAATCGCCAGCGTG
CGCTACGACAAGCGGGGAGTCGCCCGCAGCCTGGCGGCGGCGCCGCGCGAGGAAGACCTCAGCGTCGGCGTC
TATGTCGACGACGTGGTCGCCTGGAGCGAGCGGCTGGCCCGCGACCCGCGCTTCTCCCGGCTGATCCTGGTC
GGCCATAGCGAAGGCGCGCTGATCGCCAGCCTGGCGGCGCCTCGCACGCCGGCCGAGGAATTGATCGCCATC
GCCGGCAGCGGCCAACCCATCGACCGGGTGTTGCGCGAGCAACTGCGCGGTCGCCTGCCGCCGGCGCAACTG
CGCCAGGCCGACTCGGTGCTGGCTTCGCTGAAGGCCGGCGAGACCCGCAGCGATATCCCGCCGACGCTCTCC
AGCCTGCTCCGACCCAGCGTGCAGCCGTACCTGATCTCGCTGTTCCGCGAAGACCCGGCCCGCGCGTTCGGC
CGCCTGCGCATCCCGACCCTGATCGTCCAGGGCCGCAATGACATCCAGGTCGGCGTCGCCGACGCCAAGGCG
CTCCAGCGGGCCAAGCCCGACTCGCAACTGGTGCTCATCGACGGCATGAACCACATCCTGCGGATCGCCCCG
AGCACCGGTCTGCAGCAGCTTTCCGCCTACAACGACCCGAACCTGCCGCTGGCCCGGCAACTGGTCGAGGCG
GTCAGCCGCTTCATCCTGCGCGGCGCAGACGCGGAAAAAGGCCGCTGA
Translation:
MKTSMPRALLALFCLLASLAHAAPNSILHRPYDLDTGHGVLRGSLLLPRSAVPPPVVLLVAGSGPTDRDGNN
PFGGNNRYLLRLAEALAERGIASVRYDKRGVARSLAAAPREEDLSVGVYVDDVVAWSERLARDPRFSRLILV
GHSEGALIASLAAPRTPAEELIAIAGSGQPIDRVLREQLRGRLPPAQLRQADSVLASLKAGETRSDIPPTLS
SLLRPSVQPYLISLFREDPARAFGRLRIPTLIVQGRNDIQVGVADAKALQRAKPDSQLVLIDGMNHILRIAP
STGLQQLSAYNDPNLPLARQLVEAVSRFILRGADAEKGR*
AnnotationID:2325GeneID:2317
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:38
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1680
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67448.1|AE016372_3 (AE016780) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 319

 Score =  364 bits (934), Expect = e-100
 Identities = 194/313 (61%), Positives = 227/313 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4637




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21783




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37196




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2317_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2317
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3947
                           PA1680_tr
                           translation of PA1680
                           327
                           98.16
                           99.38
                           0
                           1606.0
     

     
     
120155
                           gb|AAG05069.1|AE004595_8
                           (AE004595) hypothetical protein PA1680 [Pseudomonas aeruginosa PAO1]
                           327
                           98.16
                           99.38
                           0
                           1606.0
     

     
     
120156
                           gb|AAN67448.1|AE016372_3
                           (AE016780) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440]
                           327
                           59.63
                           69.72
                           8
                           931.0
     

     
     
120157
                           gb|AAO55560.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           346
                           52.31
                           65.89
                           22
                           866.0
     

     
     
120158
                           dbj|BAA87712.1|
                           (AB016260) tiorf87 [Agrobacterium tumefaciens]
                           368
                           37.77
                           53.80
                           51
                           604.0
     

     






      

          
GC ORFID: 45319How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1680Glimmer Score: 

          
Start: 1149866Stop: 1148883

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1680 translation of PA1680Homolog Bit Score 623.0

          
Other Homologs:  t_PA1680 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACCTCCATGCCGCGCGCCCTCCTCGCCCTGTTCTGCCTGCTCGCCAGCCTGGCCCACGCCGCTCCC 
AACAGCATCCTGCACCGCCCCTACGACCTGGACACCGGGCACGGCGTGCTGCGCGGCTCCTTGCTGCTGCCG 
CGCAGCGCCGTGCCGCCGCCGGTGGTCCTGCTGGTCGCCGGCTCCGGTCCCACCGACCGCGACGGCAACAAC 
CCCTTCGGCGGCAACAACCGCTACCTGCTGCGTCTCGCCGAGGCCCTGGCCGAACGCGGAATCGCCAGCGTG 
CGCTACGACAAGCGGGGAGTCGCCCGCAGCCTGGCGGCGGCGCCGCGCGAGGAAGACCTCAGCGTCGGCGTC 
TATGTCGACGACGTGGTCGCCTGGAGCGAGCGGCTGGCCCGCGACCCGCGCTTCTCCCGGCTGATCCTGGTC 
GGCCATAGCGAAGGCGCGCTGATCGCCAGCCTGGCGGCGCCTCGCACGCCGGCCGAGGAATTGATCGCCATC 
GCCGGCAGCGGCCAACCCATCGACCGGGTGTTGCGCGAGCAACTGCGCGGTCGCCTGCCGCCGGCGCAACTG 
CGCCAGGCCGACTCGGTGCTGGCTTCGCTGAAGGCCGGCGAGACCCGCAGCGATATCCCGCCGACGCTCTCC 
AGCCTGCTCCGACCCAGCGTGCAGCCGTACCTGATCTCGCTGTTCCGCGAAGACCCGGCCCGCGCGTTCGGC 
CGCCTGCGCATCCCGACCCTGATCGTCCAGGGCCGCAATGACATCCAGGTCGGCGTCGCCGACGCCAAGGCG 
CTCCAGCGGGCCAAGCCCGACTCGCAACTGGTGCTCATCGACGGCATGAACCACATCCTGCGGATCGCCCCG 
AGCACCGGTCTGCAGCAGCTTTCCGCCTACAACGACCCGAACCTGCCGCTGGCCCGGCAACTGGTCGAGGCG 
GTCAGCCGCTTCATCCTGCGCGGCGCAGACGCGGAAAAAGGCCGCTGA