ViewGene
Locus Name:
GeneID:
Location:

GeneID:2316
TrivialName: PA14_53110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53110
PAO1 Ortholog Locus:PA0863
Sequence Length:960
Protein Length:319
Start: 4707164
Stop: 4708123
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04252.1|AE004521_3 (AE004521) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 317/319 (99%), Positives = 318/319 (99%)
Sequence:
ATGAAAGCACTGCAATTCGACCGTACCGGCGACCTCGCCGCCCTCAAGCTGGTGGACATGCCCGACCCGCTT
CCCGCCGCCGATGAGGTGCGGGTGGAAATCCGCGCCGCCGGGCTGAATCCGAGCGACGTGAAGAACGTCCTC
GGCCGCTTCCCCTATACCACCCTGCCCCGGGTACCGGGCCGCGACTTCGCCGGGGTGGTGGTGGAGGGACCG
AAGGCCCTGCTCGGCCAGGCGGTCTGGGGCACCGGGCGGGAGCCAGGGTTCTTCCGCGACGGCAGCCACGCG
CAGTTCCTGACCCTGCCGGCCGCCGGCGTCGCGCTCAAGCCGGAAAGCCTGAGCTTCGCCCAGGCCGCCAGT
TGCGGGGTGCCCTACAGCACCGCCTGGGACGCCCTGCAACGCAGCCAGGTCAAGGCCGGCACCCGGCTCCTG
GTAATCGGCGCCAACGGCGCGGTCGGCAAGGCCGCGCTGGCGCTGGCCAAGGCCCTGGGGgcggAAGCGATC
GGCGCGGTGCGGCGCGAGGAGCAACGCCAGGCGctGGAAGCGCAGGGCATCGCCGCGCTGCTGCTGGGCGAG
CCGGcCGAACtGGCGGCACAGGTGGAAGGGATCTTCCCCGGCGGGGCggaGGTGATCTTCGATACGACCGGT
TTCTGGCTCGAGGCGGCGGTCCCGGCGctGGCCGccTTCGGTCGCCTGGCGATCATCGCCGCACCAGCCGAC
GGCCATGTGCGCCTGCCGGCGTTGAACCTGTACCGTCGCGGTGGCTCGGTGGTGGGGATCAACTCGCTGCTC
TATGGCGTGGAAGCCTGCGCAGGCTTCCTCGACGCCTTCGGCAAACTGTTCGACCAAGGCCGCCTGCCGCTG
CCGGACGGGCTGCGGGAAGTCCCGCTGGAGCAGGGCGTTGAGCAGTACCGGGCAGTGAACGAAGGCACCTGC
GAGAAGATCATCCTGGTGCCTTGA
Translation:
MKALQFDRTGDLAALKLVDMPDPLPAADEVRVEIRAAGLNPSDVKNVLGRFPYTTLPRVPGRDFAGVVVEGP
KALLGQAVWGTGREPGFFRDGSHAQFLTLPAAGVALKPESLSFAQAASCGVPYSTAWDALQRSQVKAGTRLL
VIGANGAVGKAALALAKALGAEAIGAVRREEQRQALEAQGIAALLLGEPAELAAQVEGIFPGGAEVIFDTTG
FWLEAAVPALAAFGRLAIIAAPADGHVRLPALNLYRRGGSVVGINSLLYGVEACAGFLDAFGKLFDQGRLPL
PDGLREVPLEQGVEQYRAVNEGTCEKIILVP*
AnnotationID:2324GeneID:2316
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 10:10:59
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA0863
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion / General function prediction only]
        CD-Length = 326 residues, 100.0% aligned
        Score =  189 bits (481), Expect = 8e-49






   
Genomic Context:






   
Comment:


















    ReferenceID:4635




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21781




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2316
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3946
                           PA0863_tr
                           translation of PA0863
                           319
                           99.37
                           99.68
                           0
                           1607.0
     

     
     
120154
                           gb|AAG04252.1|AE004521_3
                           (AE004521) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           319
                           99.37
                           99.68
                           0
                           1607.0
     

     






      

          
GC ORFID: 45318How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0863Glimmer Score: 

          
Start: 246743Stop: 245784

          
Length: 960


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0863 translation of PA0863Homolog Bit Score 623.0

          
Other Homologs:  t_PA0863 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCACTGCAATTCGACCGTACCGGCGACCTCGCCGCCCTCAAGCTGGTGGACATGCCCGACCCGCTT 
CCCGCCGCCGATGAGGTGCGGGTGGAAATCCGCGCCGCCGGGCTGAATCCGAGCGACGTGAAGAACGTCCTC 
GGCCGCTTCCCCTATACCACCCTGCCCCGGGTACCGGGCCGCGACTTCGCCGGGGTGGTGGTGGAGGGACCG 
AAGGCCCTGCTCGGCCAGGCGGTCTGGGGCACCGGGCGGGAGCCAGGGTTCTTCCGCGACGGCAGCCACGCG 
CAGTTCCTGACCCTGCCGGCCGCCGGCGTCGCGCTCAAGCCGGAAAGCCTGAGCTTCGCCCAGGCCGCCAGT 
TGCGGGGTGCCCTACAGCACCGCCTGGGACGCCCTGCAACGCAGCCAGGTCAAGGCCGGCACCCGGCTCCTG 
GTAATCGGCGCCAACGGCGCGGTCGGCAAGGCCGCGCTGGCGCTGGCCAAGGCCCTGGGGgcggAAGCGATC 
GGCGCGGTGCGGCGCGAGGAGCAACGCCAGGCGctGGAAGCGCAGGGCATCGCCGCGCTGCTGCTGGGCGAG 
CCGGcCGAACtGGCGGCACAGGTGGAAGGGATCTTCCCCGGCGGGGCggaGGTGATCTTCGATACGACCGGT 
TTCTGGCTCGAGGCGGCGGTCCCGGCGctGGCCGccTTCGGTCGCCTGGCGATCATCGCCGCACCAGCCGAC 
GGCCATGTGCGCCTGCCGGCGTTGAACCTGTACCGTCGCGGTGGCTCGGTGGTGGGGATCAACTCGCTGCTC 
TATGGCGTGGAAGCCTGCGCAGGCTTCCTCGACGCCTTCGGCAAACTGTTCGACCAAGGCCGCCTGCCGCTG 
CCGGACGGGCTGCGGGAAGTCCCGCTGGAGCAGGGCGTTGAGCAGTACCGGGCAGTGAACGAAGGCACCTGC 
GAGAAGATCATCCTGGTGCCTTGA