ViewGene
Locus Name:
GeneID:
Location:

GeneID:2315
TrivialName: PA14_55230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55230
PAO1 Ortholog Locus:PA0702
Sequence Length:906
Protein Length:301
Start: 4905076
Stop: 4905981
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04091.1|AE004506_1 (AE004506) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 300/301 (99%), Positives = 300/301 (99%)
Sequence:
ATGCAGTTCTTCCTGCGCTACGCCTACGCGCCCCTCTTCTGGTCCGGCTTCATCGGCCTGGCGACCTGGCAG
GTCGGCTATCGCCAGGCTTCCCACGCCTGGCTGGTCGCCCTGTTCCTCGGGGCGCTCGGCCTGTCCTTTCTC
GCCGAACGACGACTGCCCTACCAGCCACGCTGGAACCGGCCGCACGCCGACCGCCTGCGCGATGTCCTGCAC
GCGTCGGTCAACGAAAGCCTGAACGCACTTGGCATCCTCGCCCTGCCACTGCTGGCCGGAGTCCTGAGCTTC
TGGCCGGTGTGGCCGCAGGCCTGGCCGCTGTGGCTGCAACTGCTGCTGGCGATCGTCCTGGCCGATCTCGGC
ATCACCCTGGTGCACTACGCCAGCCACCGTTCGGCGCTGCTTTGGCGGCTGCACGCGGTGCACCATAGCGTG
CAGCGCCTGTACGGTTTCAACGGTCTGATGAAACATCCCCTGCACCTGGGCCTGGAAGCGCTCGGCGGCACC
CTGCCGCTGTTGCTGCTCGGCGTGCCGCAGACGGTCGCCGCGCTGCTCGCCTTCGCCATCGGCATCCAGTTG
CTGCTGCAACACAGCAACGTCGACATGCGCATCGGCGGGTTACGCCATGTGTTCGCCTGGGCACCGCTGCAT
CGCCTACACCACATCCGCTACGGGCGCGCCGGCGACGTCAACTTCGCGCTGTTCTTCAGCGTCTGGGACCGC
CTGCTCGGCACCGCCCTCCATCGTCCCGACTACCGCCTGGACAGCACCGACATGGGCATCGGCGACCAGCCT
GACTATCCCCGCGACTATGCCGGCCAGTTGCTCGCGCCATTCCGCGACCTGCCACGCAGCAGGCACGTCCCA
CAGCCGCCGGAAGGATTGGGGCGTTCAGCCGGCCAGGCGTAG
Translation:
MQFFLRYAYAPLFWSGFIGLATWQVGYRQASHAWLVALFLGALGLSFLAERRLPYQPRWNRPHADRLRDVLH
ASVNESLNALGILALPLLAGVLSFWPVWPQAWPLWLQLLLAIVLADLGITLVHYASHRSALLWRLHAVHHSV
QRLYGFNGLMKHPLHLGLEALGGTLPLLLLGVPQTVAALLAFAIGIQLLLQHSNVDMRIGGLRHVFAWAPLH
RLHHIRYGRAGDVNFALFFSVWDRLLGTALHRPDYRLDSTDMGIGDQPDYPRDYAGQLLAPFRDLPRSRHVP
QPPEGLGRSAGQA*
AnnotationID:2323GeneID:2315
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0702
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3000, ERG3, Sterol desaturase [Lipid metabolism]
    CD-Length = 271 residues, only  60.5% aligned
    Score = 98.6 bits (245), Expect = 2e-21






   
Genomic Context:






   
Comment:


















    ReferenceID:4633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21779




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2315
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3945
                           PA0702_tr
                           translation of PA0702
                           301
                           99.66
                           99.66
                           0
                           1606.0
     

     
     
120153
                           gb|AAG04091.1|AE004506_1
                           (AE004506) hypothetical protein PA0702 [Pseudomonas aeruginosa PAO1]
                           301
                           99.66
                           99.66
                           0
                           1606.0
     

     






      

          
GC ORFID: 45317How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0702Glimmer Score: 

          
Start: 48831Stop: 47926

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0702 translation of PA0702Homolog Bit Score 623.0

          
Other Homologs:  t_PA0702 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGTTCTTCCTGCGCTACGCCTACGCGCCCCTCTTCTGGTCCGGCTTCATCGGCCTGGCGACCTGGCAG 
GTCGGCTATCGCCAGGCTTCCCACGCCTGGCTGGTCGCCCTGTTCCTCGGGGCGCTCGGCCTGTCCTTTCTC 
GCCGAACGACGACTGCCCTACCAGCCACGCTGGAACCGGCCGCACGCCGACCGCCTGCGCGATGTCCTGCAC 
GCGTCGGTCAACGAAAGCCTGAACGCACTTGGCATCCTCGCCCTGCCACTGCTGGCCGGAGTCCTGAGCTTC 
TGGCCGGTGTGGCCGCAGGCCTGGCCGCTGTGGCTGCAACTGCTGCTGGCGATCGTCCTGGCCGATCTCGGC 
ATCACCCTGGTGCACTACGCCAGCCACCGTTCGGCGCTGCTTTGGCGGCTGCACGCGGTGCACCATAGCGTG 
CAGCGCCTGTACGGTTTCAACGGTCTGATGAAACATCCCCTGCACCTGGGCCTGGAAGCGCTCGGCGGCACC 
CTGCCGCTGTTGCTGCTCGGCGTGCCGCAGACGGTCGCCGCGCTGCTCGCCTTCGCCATCGGCATCCAGTTG 
CTGCTGCAACACAGCAACGTCGACATGCGCATCGGCGGGTTACGCCATGTGTTCGCCTGGGCACCGCTGCAT 
CGCCTACACCACATCCGCTACGGGCGCGCCGGCGACGTCAACTTCGCGCTGTTCTTCAGCGTCTGGGACCGC 
CTGCTCGGCACCGCCCTCCATCGTCCCGACTACCGCCTGGACAGCACCGACATGGGCATCGGCGACCAGCCT 
GACTATCCCCGCGACTATGCCGGCCAGTTGCTCGCGCCATTCCGCGACCTGCCACGCAGCAGGCACGTCCCA 
CAGCCGCCGGAAGGATTGGGGCGTTCAGCCGGCCAGGCGTAG