ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2314

TrivialName: PA14_55480

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55480

PAO1 Ortholog Locus: PA0682

Sequence Length: 966

Protein Length: 321

Start: 4940105

Stop: 4939140

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04071.1|AE004503_9 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] Identities = 318/321 (99%), Positives = 318/321 (99%)

Sequence:

ATGAACGGTCATCGCCAGCGCGGCATGGCGATCATCAGCGCGCTGCTGATCGTCACCGTGGTTGCGGTCATA
GCCGCCGGCCTGATCGCCCGCCAGAGCGCATTCATCCGCGCCCTGGAAAGCGAGCAGCTACGCATCCAGGCC
GGCTGGATGCTGCGCGGCGGCCTGGAATGGAGCCGCCAGTTGCTGCTCGAGGACAGCCGCCGCGACCCGCTG
ACCCGCCTCGACCAGCGCTGGGCGCAACCGATGCGTGGCTTGCGTCTGAGCAGCGCCGAATTGCCGTTCAAC
GGCCAACTGGAAGACGAGCAGGGCAAGTTCAACCTGCGCAACCTGTTGGTCGACCAGCGCCCCGATCTCCAG
GAGCGAGCGAACTTCGAACGCCTCGCCGGTCTGCTCGGCGTGCGCCCGAAGGAGACGCGGCTGATCGTCGAG
CGGGTACTCGATTCCTATGCACGGCTGCCCGCCGAAGCGCCGCCGGCCGAGACGCAACCCGCAGGCTTCGAC
AGCGGCCGCGAGACTTCGCCGGGCGCCGTGTTGCGTGCGCTTCCGGCGCGCATGCCGGCGCTCAGGCGTCTC
GACGACCTGGCGCGGCTGGGCATTCCGCCGGCGACCCTGGAGCGCCTGCGGCCCTACGTCACCATCCTGCCC
GAAACCACCTGGATCAACGGCAACACCGCGCGCGCCGAAGTGCTCGCCGCCTGTGTCCCCGGCCTCGGGCTG
GACCAGGCGCGGCGGGTGCTCGGCGAGCGCGACCGGGGCCGCTGGTTCCTCAATCGCGGCGACTTCGTCAAC
CGCCTGAACATGCCGCAATTGCAGGCGCAGTCGGTGAAGGTCGGGATCACCAGCGACTGGTTCCTGCTCACC
GCCTATGCTCGGCGCGACCGGCAAGAGGTGCGCCTGCAAGCCCTGGTGCAGCGCAAGGCCGGTGAAAGCACG
GCGGTCAACTGGATGAGGGTGGGCTCATGA

Translation:

MNGHRQRGMAIISALLIVTVVAVIAAGLIARQSAFIRALESEQLRIQAGWMLRGGLEWSRQLLLEDSRRDPL
TRLDQRWAQPMRGLRLSSAELPFNGQLEDEQGKFNLRNLLVDQRPDLQERANFERLAGLLGVRPKETRLIVE
RVLDSYARLPAEAPPAETQPAGFDSGRETSPGAVLRALPARMPALRRLDDLARLGIPPATLERLRPYVTILP
ETTWINGNTARAEVLAACVPGLGLDQARRVLGERDRGRWFLNRGDFVNRLNMPQLQAQSVKVGITSDWFLLT
AYARRDRQEVRLQALVQRKAGESTAVNWMRVGS*

AnnotationID:2322 GeneID:2314

AnnotatorUID: danlee

Modification Date/Time: 2004-03-11 14:02:20

Gene Name:

Confidence Code: 3

GeneProduct: probable type II secretion system protein

Cell Localization: ()

Synonyms: PA0682, hxcX

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam03934, GspK.
  CD-Length = 306 residues, 100.0% aligned
  Score =  247 bits (631), Expect = 3e-66

COG3156, PulK.
  CD-Length = 323 residues,  89.8% aligned
  Score = 178 bits (452), Expect = 2e-45

Genomic Context:

Comment:

ReferenceID:4631

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21777

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:2314

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3944 PA0682_tr translation of PA0682 321 99.06 99.06 0 1607.0

120152 gb|AAG04071.1|AE004503_9 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] 321 99.06 99.06 0 1607.0

GC ORFID: `45316`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0682`	Glimmer Score:
Start: `13802`	Stop: `14767`
Length: `966`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0682 translation of PA0682`	Homolog Bit Score `623.0`
Other Homologs: `t_PA0682 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACGGTCATCGCCAGCGCGGCATGGCGATCATCAGCGCGCTGCTGATCGTCACCGTGGTTGCGGTCATA GCCGCCGGCCTGATCGCCCGCCAGAGCGCATTCATCCGCGCCCTGGAAAGCGAGCAGCTACGCATCCAGGCC GGCTGGATGCTGCGCGGCGGCCTGGAATGGAGCCGCCAGTTGCTGCTCGAGGACAGCCGCCGCGACCCGCTG ACCCGCCTCGACCAGCGCTGGGCGCAACCGATGCGTGGCTTGCGTCTGAGCAGCGCCGAATTGCCGTTCAAC GGCCAACTGGAAGACGAGCAGGGCAAGTTCAACCTGCGCAACCTGTTGGTCGACCAGCGCCCCGATCTCCAG GAGCGAGCGAACTTCGAACGCCTCGCCGGTCTGCTCGGCGTGCGCCCGAAGGAGACGCGGCTGATCGTCGAG CGGGTACTCGATTCCTATGCACGGCTGCCCGCCGAAGCGCCGCCGGCCGAGACGCAACCCGCAGGCTTCGAC AGCGGCCGCGAGACTTCGCCGGGCGCCGTGTTGCGTGCGCTTCCGGCGCGCATGCCGGCGCTCAGGCGTCTC GACGACCTGGCGCGGCTGGGCATTCCGCCGGCGACCCTGGAGCGCCTGCGGCCCTACGTCACCATCCTGCCC GAAACCACCTGGATCAACGGCAACACCGCGCGCGCCGAAGTGCTCGCCGCCTGTGTCCCCGGCCTCGGGCTG GACCAGGCGCGGCGGGTGCTCGGCGAGCGCGACCGGGGCCGCTGGTTCCTCAATCGCGGCGACTTCGTCAAC CGCCTGAACATGCCGCAATTGCAGGCGCAGTCGGTGAAGGTCGGGATCACCAGCGACTGGTTCCTGCTCACC GCCTATGCTCGGCGCGACCGGCAAGAGGTGCGCCTGCAAGCCCTGGTGCAGCGCAAGGCCGGTGAAAGCACG GCGGTCAACTGGATGAGGGTGGGCTCATGA