ViewGene
Locus Name:
GeneID:
Location:

GeneID:2311
TrivialName: PA14_00360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00360
PAO1 Ortholog Locus:PA0030
Sequence Length:924
Protein Length:307
Start: 33004
Stop: 32081
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03420.1|AE004442_7 (AE004442) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 306/307 (99%), Positives = 306/307 (99%)
Sequence:
ATGAACCGGCTTCCCACCTGCCTGCTGGCCGCCACCCTGTTCCTGGGCAGCGCCTCGCTATACGCCGAAGAC
CCCGCCTGTGCCCGCGTCAGGCTGGCCGATCCAGGCTGGAGCGATATCGCGGTGACCAACGCCACCGCCGCG
TTTCTCCTGGAAAGCCTCGGCTACCAGGTGAAGATCGATACCCTGTCGGTGCCGATCATCTATGGCGGCCTG
CGCGACGGCCAGGTGGACGCCTTCCTCGGCGGCTGGATGCCCGCGCACCAGGACTATCACGACAAGTTCGTC
GCCAGCGGCCAGGTCGAACGCCTCGCTCGCAACCTCGATGGCACCCGCTTCACCCTGGCGGTGCCGCGCTAC
GTCTGGGACGCCGGCGTACACCGCTTCGAAGACCTCGCCGCGCAAGGGCAACGCTTCAACCGCAAGCTGTAC
GGGATCGGCTCCGGCGCGCCGGCCAATCAGTCGATCCAGAAGATGATCGACGCCAACCAGTTCGGCCTCGGC
GACTGGAAGCTGGTGGAGTCCAGCGAGCAGGCGATGCTCGCCGAACTCGGCCGGGCCGAGAAGCGCCAGCGC
TGGCTGGTGTTCCTCGGCTGGACGCCGCACCCGATGAACATCCGCCATGACCTGCGCTACCTGGAAGGCGGC
GAGCAGTACTTCGGCGACCGCGGCCAGGTCTATACCCTGGCACGCAAGGGCTACGCCGCGCAGTGCCCGAAC
CCGGCGCGGCTGCTGGCCAACCTGCGCTTCGACCTGGACATGGAGAACCGCCTGATGAGCGACGCGCTGGAA
GGCACGGCGACTCCGGCCTCGGCGACCCGCGCCTGGCTCAAGGCCAACCCGCGGGTGCTCGAGGCCtgGctg
CAAGGGGTGACCAGCCGCGACGGCGGCGACGCCCTGGCCGCGGTTCGCGGCCAGCCATAG
Translation:
MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTNATAAFLLESLGYQVKIDTLSVPIIYGGL
RDGQVDAFLGGWMPAHQDYHDKFVASGQVERLARNLDGTRFTLAVPRYVWDAGVHRFEDLAAQGQRFNRKLY
GIGSGAPANQSIQKMIDANQFGLGDWKLVESSEQAMLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGG
EQYFGDRGQVYTLARKGYAAQCPNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPRVLEAWL
QGVTSRDGGDALAAVRGQP*
AnnotationID:2319GeneID:2311
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:25
Gene Name:
Confidence Code:3
GeneProduct:putative glycine betaine/L-proline ABC transporter, periplasmic substrate-binding protein
Cell Localization:()
Synonyms:PA0030
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2113,pfam04069
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65710.1|AE016197_8 (AE016774) glycine betaine-binding protein, putative [Pseudomonas
           putida KT2440]
          Length = 313

 Score =  382 bits (981), Expect = e-105
 Identities = 179/306 (58%), Positives = 233/306 (76%)

>gb|AAO53720.1| (AE016856) glycine/betaine family, ABC transporter,
           substrate-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 308

 Score =  379 bits (973), Expect = e-104
 Identities = 177/307 (57%), Positives = 233/307 (75%), Gaps = 1/307 (0%)








 
Structural Features:
COG2113, ProX, ABC-type proline/glycine betaine transport systems, periplasmic components 
[Amino acid transport and metabolism]
CD-Length = 302 residues,  99.0% aligned
Score =  313 bits (802), Expect = 2e-86
Identities = 121/299 (40%), Positives = 165/299 (55%), Gaps = 3/299 (1%)

pfam04069, OpuAC, Substrate binding domain of ABC-type glycine betaine transport system.
CD-Length = 260 residues, 100.0% aligned
Score =  237 bits (607), Expect = 1e-63
Identities = 85/264 (32%), Positives = 125/264 (47%), Gaps = 6/264 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21771




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33395




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2311_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2311
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3936
                           PA0030_tr
                           translation of PA0030
                           307
                           99.67
                           99.67
                           0
                           1611.0
     

     
     
120077
                           gb|AAG03420.1|AE004442_7
                           (AE004442) hypothetical protein PA0030 [Pseudomonas aeruginosa PAO1]
                           307
                           99.67
                           99.67
                           0
                           1611.0
     

     
     
120079
                           gb|AAO53720.1|
                           (AE016856) glycine/betaine family, ABC transporter, substrate-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           308
                           57.46
                           75.64
                           1
                           972.0
     

     
     
120078
                           gb|AAN65710.1|AE016197_8
                           (AE016774) glycine betaine-binding protein, putative [Pseudomonas putida KT2440]
                           313
                           57.18
                           74.44
                           6
                           978.0
     

     
     
120080
                           gb|AAL45441.1|
                           (AE009393) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           318
                           48.11
                           64.77
                           12
                           797.0
     

     






      

          
GC ORFID: 45313How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0030Glimmer Score: 

          
Start: 5834341Stop: 5833418

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0030 translation of PA0030Homolog Bit Score 625.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4093 (ORF: BLASTX 379.0), t_PA5378 (ORF: BLASTX 290.0), t_PA5388 (ORF: BLASTX 233.0), psyr_15may02_Scaffold7_revised_gene7149 (ORF: BLASTX 213.0), t_PA0030 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGGCTTCCCACCTGCCTGCTGGCCGCCACCCTGTTCCTGGGCAGCGCCTCGCTATACGCCGAAGAC 
CCCGCCTGTGCCCGCGTCAGGCTGGCCGATCCAGGCTGGAGCGATATCGCGGTGACCAACGCCACCGCCGCG 
TTTCTCCTGGAAAGCCTCGGCTACCAGGTGAAGATCGATACCCTGTCGGTGCCGATCATCTATGGCGGCCTG 
CGCGACGGCCAGGTGGACGCCTTCCTCGGCGGCTGGATGCCCGCGCACCAGGACTATCACGACAAGTTCGTC 
GCCAGCGGCCAGGTCGAACGCCTCGCTCGCAACCTCGATGGCACCCGCTTCACCCTGGCGGTGCCGCGCTAC 
GTCTGGGACGCCGGCGTACACCGCTTCGAAGACCTCGCCGCGCAAGGGCAACGCTTCAACCGCAAGCTGTAC 
GGGATCGGCTCCGGCGCGCCGGCCAATCAGTCGATCCAGAAGATGATCGACGCCAACCAGTTCGGCCTCGGC 
GACTGGAAGCTGGTGGAGTCCAGCGAGCAGGCGATGCTCGCCGAACTCGGCCGGGCCGAGAAGCGCCAGCGC 
TGGCTGGTGTTCCTCGGCTGGACGCCGCACCCGATGAACATCCGCCATGACCTGCGCTACCTGGAAGGCGGC 
GAGCAGTACTTCGGCGACCGCGGCCAGGTCTATACCCTGGCACGCAAGGGCTACGCCGCGCAGTGCCCGAAC 
CCGGCGCGGCTGCTGGCCAACCTGCGCTTCGACCTGGACATGGAGAACCGCCTGATGAGCGACGCGCTGGAA 
GGCACGGCGACTCCGGCCTCGGCGACCCGCGCCTGGCTCAAGGCCAACCCGCGGGTGCTCGAGGCCtgGctg 
CAAGGGGTGACCAGCCGCGACGGCGGCGACGCCCTGGCCGCGGTTCGCGGCCAGCCATAG