ViewGene

Locus Name:
GeneID:
Location:

GeneID:231
TrivialName: PA14_59690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59690
PAO1 Ortholog Locus:
Sequence Length:2235
Protein Length:744
Start: 5310109
Stop: 5312343
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84173.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 744/744 (100%), Positives = 744/744 (100%)
Sequence:
ATGGCTGGCCAGTACCCGTTGGAAGCGCTCTTGCGGCCTGCCGTGGAGCTCTACACCACCACCGTGTGCTTC
ACCGCAGCCGCGCTCTGCATCGTCGCGCCGTGGACGTTCTCCCTCACTCCGCTGTTCGGCATCGTGGCCGCG
CTGTGCTTCGCCTGGCTGGGTATCGTGCGGCTGAAGCAGGCCGGCGTGGTGCTCCGCTACCGGCGGAACATT
CGCCGACTGCCGAAGTACACGATGACCAGCGCCGAGATGCCGGTCAGCAACGAACACCTGTTCATCGGTAAA
GGATTTCGCTGGACGCAGAAGCATACGCAGCGCCTGGCAGATACCTACCTGCCCCAGTTCGCCTCTTACGTC
GAGCCCTCGCCCCTCTACGAGCGCGCGCGCCGGTTGGAGAAGCAGCTCGAGTTCGCCCCCTTCCCCCTGAAG
CTGGTCGCCAAAGCCACTGCCTGGGACGTGGCCTGGAACCCCGCACGGCCGCTGCCGCCCGTGGGCGGTTTG
CCTCGGCTCCATGGCATCGAGCCGCGCGAACAGGACGTAGGCCTGCAACTGGGCGAGCGCGTCGGCCACACA
CTGGTACTCGGCACCACGCGGGTGGGTAAGACGCGCCTCGCGGAGCTGTTCATCACCCAGGATATTCGCCGC
ACTCACTGCCGGGTACGACGCCGGCGGGTGAAGATGGGCCGGCGGACCCAGACGGTTCACCACGGCTATCGG
CGCCGGCGCGCAGAGGAGCAGCCGGACTACGAGGTGGTGATCGTCTTCGACCCGAAAGGCGACGCTGACCTG
CTGAAGCGTATGTACGTGGAATGCGAACGTGCCGGCCGCCTGGACGAGTTCTACGTGTTCCACCTCGGTCAT
CCTGACCTGTCGGCACGCTACAACGCCGTCGGCCGGTTCGGTCGGATCTCCGAGGTCGCCACCCGCGTCGCC
GGCCAGCTCTCCGGCGAGGGCAACAGCGCGGCGTTCCGCGAGTTCGCCTGGCGGTTCGTCAACATCATCGCC
CGCGCGCTGCACGCGCTGGGTATCCGGCCTGACTACCAGCAGATCCTCCGGCACGTCGTGAACATCGATGCG
TTGTTCGTCGAATATGCGCAGAAATACATCAGCGAGCACGATCCCAGGGCCTGGGACACCATCATCCAGATC
GAGGGCAAGCTCAACGACAAGAACATCCCGTTCAACATGAAAGGACGGCCCCTGCGGGTCGTAGCCATCGAC
CAGTACCTGACACAGAAACGCATCGCCGACCCGGTCATGGAAGGCTTGAAGAGCGCCGTGCGCTACGACAAG
ACCTACTTCGACAAGATCGTGGCCTCGCTGCTGCCGCTACTGGAGAAACTCACTACCGGGCGGATCTCGGAG
CTTCTTTCGCCCAACTACGCGGACCTCAACGATCCGCGGCCGATCTTCGACTGGATGCAGGTCATCCGCAAA
CGCGCCGTGGTCTACGTCGGCCTCGACGCACTATCGGATACCGAGGTCGCCGCCGCGGTGGGCAACTCCATG
TTCAGCGACCTGGTCTCGGTAGCGGGTCACATCTACAAGCATGGTGTCGATGACGGCCTGCCCGGCTCGCTC
GCCAGCGGCAAGGTCCGCATCAACCTGCATGCCGACGAGTTCAACGAGCTGATTGGCGACGAGTTCATCCCC
ATGGTCAACAAAGCGGGCGGCGCCGGCGTGCAGGTGACGGCCTACACCCAGACCATGAGCGACATCGAGGCC
AAGATCGGCTCCCGCGCGAAGGCCGGTCAGATCATCGGCAACTTCAACAACCTGTTCATGCTGCGGGTGCGC
GAGACCGCCACGGCCGAACTCCTTACCAATCAGCTCCCCAAGGTCCAGATCTACACCAGCACGCCGGCGAGC
GGCGCCAACGACGCGATCAACAACAACAAGAAGGTAGCCTTCACCTCCAGCTCGCACGACCAGGTGCAGATG
ACCAGCGTGCCGATGCTCGAGCCGGCCCACATCATTGGTCTGCCCAAAGGACAAGCGTTCGCGCTACTCGAG
GGCGGCAATCTCTGGAAGATCCGAATGCCGCTGCCGGCGGTCGCCCCCGACGAGGTGATGCCGAAAAGCCTG
CAGGAGCTGGCTGCCGGTATGCGCAAGGGCCAGGCCGCCAACAGCGAGTGGTGGGAGGCGCCGGGATACTCC
GCCCTGCAGGATGGTCTGCCCCAGGACCTGGTCGACGATTTCCGTCACCTCGGCACCGGTGAGGATGCCGCC
TGA
Translation:
MAGQYPLEALLRPAVELYTTTVCFTAAALCIVAPWTFSLTPLFGIVAALCFAWLGIVRLKQAGVVLRYRRNI
RRLPKYTMTSAEMPVSNEHLFIGKGFRWTQKHTQRLADTYLPQFASYVEPSPLYERARRLEKQLEFAPFPLK
LVAKATAWDVAWNPARPLPPVGGLPRLHGIEPREQDVGLQLGERVGHTLVLGTTRVGKTRLAELFITQDIRR
THCRVRRRRVKMGRRTQTVHHGYRRRRAEEQPDYEVVIVFDPKGDADLLKRMYVECERAGRLDEFYVFHLGH
PDLSARYNAVGRFGRISEVATRVAGQLSGEGNSAAFREFAWRFVNIIARALHALGIRPDYQQILRHVVNIDA
LFVEYAQKYISEHDPRAWDTIIQIEGKLNDKNIPFNMKGRPLRVVAIDQYLTQKRIADPVMEGLKSAVRYDK
TYFDKIVASLLPLLEKLTTGRISELLSPNYADLNDPRPIFDWMQVIRKRAVVYVGLDALSDTEVAAAVGNSM
FSDLVSVAGHIYKHGVDDGLPGSLASGKVRINLHADEFNELIGDEFIPMVNKAGGAGVQVTAYTQTMSDIEA
KIGSRAKAGQIIGNFNNLFMLRVRETATAELLTNQLPKVQIYTSTPASGANDAINNNKKVAFTSSSHDQVQM
TSVPMLEPAHIIGLPKGQAFALLEGGNLWKIRMPLPAVAPDEVMPKSLQELAAGMRKGQAANSEWWEAPGYS
ALQDGLPQDLVDDFRHLGTGEDAA*
AnnotationID:241GeneID:231
AnnotatorUID: diggins
Modification Date/Time: 2006-01-25 06:06:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:465
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17607
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:231

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
22724 gb|AAP84173.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 744 99.99 99.99 0 3861.0
22726 emb|CAC86813.1| (AJ344068) hypothetical protein [Pseudomonas putida] 746 68.49 79.75 30 2673.0
22725 gb|AAN62290.1|AF440524_77 (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa] 751 68.17 79.49 34 2676.0
22727 emb|CAE92922.1| (AJ617740) hypothetical protein [Pseudomonas putida] 755 67.28 79.33 38 2658.0
22728 gb|AAN62159.1|AF440523_66 (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa] 756 66.93 78.70 39 2641.0
GC ORFID: 43233How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL047Glimmer Score:
Start: 4573788Stop: 4576022
Length: 2235
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL047 744 Homolog: ORF106 / Hypothetical protein / P. putida / plasmid pWWO (CAC86813) translation of RL047Homolog Bit Score 1491.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1632 (ORF: BLASTX 1092.0), t_RL047 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGGCCAGTACCCGTTGGAAGCGCTCTTGCGGCCTGCCGTGGAGCTCTACACCACCACCGTGTGCTTC
ACCGCAGCCGCGCTCTGCATCGTCGCGCCGTGGACGTTCTCCCTCACTCCGCTGTTCGGCATCGTGGCCGCG
CTGTGCTTCGCCTGGCTGGGTATCGTGCGGCTGAAGCAGGCCGGCGTGGTGCTCCGCTACCGGCGGAACATT
CGCCGACTGCCGAAGTACACGATGACCAGCGCCGAGATGCCGGTCAGCAACGAACACCTGTTCATCGGTAAA
GGATTTCGCTGGACGCAGAAGCATACGCAGCGCCTGGCAGATACCTACCTGCCCCAGTTCGCCTCTTACGTC
GAGCCCTCGCCCCTCTACGAGCGCGCGCGCCGGTTGGAGAAGCAGCTCGAGTTCGCCCCCTTCCCCCTGAAG
CTGGTCGCCAAAGCCACTGCCTGGGACGTGGCCTGGAACCCCGCACGGCCGCTGCCGCCCGTGGGCGGTTTG
CCTCGGCTCCATGGCATCGAGCCGCGCGAACAGGACGTAGGCCTGCAACTGGGCGAGCGCGTCGGCCACACA
CTGGTACTCGGCACCACGCGGGTGGGTAAGACGCGCCTCGCGGAGCTGTTCATCACCCAGGATATTCGCCGC
ACTCACTGCCGGGTACGACGCCGGCGGGTGAAGATGGGCCGGCGGACCCAGACGGTTCACCACGGCTATCGG
CGCCGGCGCGCAGAGGAGCAGCCGGACTACGAGGTGGTGATCGTCTTCGACCCGAAAGGCGACGCTGACCTG
CTGAAGCGTATGTACGTGGAATGCGAACGTGCCGGCCGCCTGGACGAGTTCTACGTGTTCCACCTCGGTCAT
CCTGACCTGTCGGCACGCTACAACGCCGTCGGCCGGTTCGGTCGGATCTCCGAGGTCGCCACCCGCGTCGCC
GGCCAGCTCTCCGGCGAGGGCAACAGCGCGGCGTTCCGCGAGTTCGCCTGGCGGTTCGTCAACATCATCGCC
CGCGCGCTGCACGCGCTGGGTATCCGGCCTGACTACCAGCAGATCCTCCGGCACGTCGTGAACATCGATGCG
TTGTTCGTCGAATATGCGCAGAAATACATCAGCGAGCACGATCCCAGGGCCTGGGACACCATCATCCAGATC
GAGGGCAAGCTCAACGACAAGAACATCCCGTTCAACATGAAAGGACGGCCCCTGCGGGTCGTAGCCATCGAC
CAGTACCTGACACAGAAACGCATCGCCGACCCGGTCATGGAAGGCTTGAAGAGCGCCGTGCGCTACGACAAG
ACCTACTTCGACAAGATCGTGGCCTCGCTGCTGCCGCTACTGGAGAAACTCACTACCGGGCGGATCTCGGAG
CTTCTTTCGCCCAACTACGCGGACCTCAACGATCCGCGGCCGATCTTCGACTGGATGCAGGTCATCCGCAAA
CGCGCCGTGGTCTACGTCGGCCTCGACGCACTATCGGATACCGAGGTCGCCGCCGCGGTGGGCAACTCCATG
TTCAGCGACCTGGTCTCGGTAGCGGGTCACATCTACAAGCATGGTGTCGATGACGGCCTGCCCGGCTCGCTC
GCCAGCGGCAAGGTCCGCATCAACCTGCATGCCGACGAGTTCAACGAGCTGATTGGCGACGAGTTCATCCCC
ATGGTCAACAAAGCGGGCGGCGCCGGCGTGCAGGTGACGGCCTACACCCAGACCATGAGCGACATCGAGGCC
AAGATCGGCTCCCGCGCGAAGGCCGGTCAGATCATCGGCAACTTCAACAACCTGTTCATGCTGCGGGTGCGC
GAGACCGCCACGGCCGAACTCCTTACCAATCAGCTCCCCAAGGTCCAGATCTACACCAGCACGCCGGCGAGC
GGCGCCAACGACGCGATCAACAACAACAAGAAGGTAGCCTTCACCTCCAGCTCGCACGACCAGGTGCAGATG
ACCAGCGTGCCGATGCTCGAGCCGGCCCACATCATTGGTCTGCCCAAAGGACAAGCGTTCGCGCTACTCGAG
GGCGGCAATCTCTGGAAGATCCGAATGCCGCTGCCGGCGGTCGCCCCCGACGAGGTGATGCCGAAAAGCCTG
CAGGAGCTGGCTGCCGGTATGCGCAAGGGCCAGGCCGCCAACAGCGAGTGGTGGGAGGCGCCGGGATACTCC
GCCCTGCAGGATGGTCTGCCCCAGGACCTGGTCGACGATTTCCGTCACCTCGGCACCGGTGAGGATGCCGCC
TGA