ViewGene
Locus Name:
GeneID:
Location:

GeneID:2308
TrivialName: PA14_14990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14990
PAO1 Ortholog Locus:PA3795
Sequence Length:951
Protein Length:316
Start: 1272782
Stop: 1271832
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07182.1|AE004798_5 (AE004798) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 316/316 (100%), Positives = 316/316 (100%)
Sequence:
ATGACCACACGCAAACTCGGCAACTCTGGCCTGGAGATACCGGCACTGGTATTCGGCGGCAACGTCTTCGGC
TGGACTGCCGACGAAAGCACCTCCTTCAGGCTGCTGGACGCCCTGCTCGACGCCGGCCTGAACTGCATCGAC
ACCGCCGACGTCTATTCGCGCTGGGTTCCCGGGCACCAGGGCGGCGAGTCGGAAACCCTCATCGGCAAGTGG
CTGAAACGCACCGGCAAACGCGACCGCATGGTGATCGCCAGCAAGGTCGGGATGGACATGGGCAATGGCCAC
AAAGGCCTATCCGCCGCCTATATCGAGCAGGCCCTGGAGCGCTCGCTACGACGCCTGCAGACCGACTACCTG
GACCTCTACCAGTCGCACACCGACGATCCCCACACCGACCTGGAGGAAACCCTTTCCACCTATGGCGAACTG
ATCAAGAAAGGCAAGGTACGGGTCATCGGCGCCTCCAACTACGACGCCCGGCGCCTCCTCGAAGCGCGCCAG
GTCAGCGCCCGGCTTAACCTGCCGAGCTACCAGAGCCTGCAACCCGAATACAACCTGTACGATCGCGCCGAC
TACGAGACCAACCTGGAGCCGACGGTGGAAGAACTCGGTATCGGGGTGATCAGCTACTACTCGCTGGCCAGC
GGCTTCCTCAGCGGCAAGTACCGCAACCAGGCCGACACCGCCGGGCGAGCCCGGGGAGAGAAGGTGAAGGGT
TATCTCAACGAGCGCGGCGTGGCCATCCTCGCGGCGCTCGACGAAGTGGCCGAGCAGTACAACGCCAACCCG
ACCCAGGTCGCCCTGGCCTGGCTCATCGCTCGCCCGACGGTGACCGCGCCGATCGCCAGCGCCACCAGCCTG
GAACAGCTCGACGACCTGATCGCCGCCACCCACCTGAAGCTCGACGAACAGGCGATCCACCGCCTGGACAGC
GCCAGCGCCTATTGA
Translation:
MTTRKLGNSGLEIPALVFGGNVFGWTADESTSFRLLDALLDAGLNCIDTADVYSRWVPGHQGGESETLIGKW
LKRTGKRDRMVIASKVGMDMGNGHKGLSAAYIEQALERSLRRLQTDYLDLYQSHTDDPHTDLEETLSTYGEL
IKKGKVRVIGASNYDARRLLEARQVSARLNLPSYQSLQPEYNLYDRADYETNLEPTVEELGIGVISYYSLAS
GFLSGKYRNQADTAGRARGEKVKGYLNERGVAILAALDEVAEQYNANPTQVALAWLIARPTVTAPIASATSL
EQLDDLIAATHLKLDEQAIHRLDSASAY*
AnnotationID:2316GeneID:2308
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:19
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:mocA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0667,KOG1575,pfam00248
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM39590.1| (AE012123) oxidoreductase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 322

 Score =  374 bits (961), Expect = e-103
 Identities = 196/316 (62%), Positives = 242/316 (76%), Gaps = 6/316 (1%)

>gb|AAK24608.1| (AE005932) oxidoreductase, aldo/keto reductase family [Caulobacter
           crescentus CB15]
          Length = 314

 Score =  336 bits (862), Expect = 9e-92
 Identities = 172/314 (54%), Positives = 217/314 (69%), Gaps = 






 
Structural Features:
COG0667, Tas, Predicted oxidoreductases 
(related to aryl-alcohol dehydrogenases) 
[Energy production and conversion]
CD-Length = 316 residues,  98.1% aligned
Score =  301 bits (773), Expect = 1e-82
Identities = 147/323 (45%), Positives = 201/323 (62%), Gaps = 20/323 (6%)

KOG1575, Voltage-gated shaker-like K+ channel, subunit beta/KCNAB 
[Energy production and conversion]
CD-Length = 336 residues,  92.6% aligned
Score =  236 bits (603), Expect = 5e-63
Identities = 120/322 (37%), Positives = 181/322 (56%), Gaps = 21/322 (6%)

pfam00248, Aldo_ket_red, Aldo/keto reductase family.
CD-Length = 279 residues,  98.9% aligned
Score =  168 bits (427), Expect = 1e-42
Identities = 90/311 (28%), Positives = 139/311 (44%), Gaps = 40/311 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4619




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21765




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31765




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2308_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2308
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3933
                           PA3795_tr
                           translation of PA3795
                           316
                           99.99
                           99.99
                           0
                           1613.0
     

     
     
119901
                           gb|AAG07182.1|AE004798_5
                           (AE004798) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           316
                           99.99
                           99.99
                           0
                           1613.0
     

     
     
119902
                           gb|AAM39590.1|
                           (AE012123) oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           325
                           60.30
                           74.46
                           12
                           964.0
     

     
     
119903
                           gb|AAM35180.1|
                           (AE011653) oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
                           326
                           60.12
                           73.31
                           13
                           951.0
     

     
     
119904
                           dbj|BAB50401.1|
                           (AP003002) hypothetical protein [Mesorhizobium loti]
                           316
                           58.54
                           70.56
                           1
                           914.0
     

     






      

          
GC ORFID: 45310How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3795Glimmer Score: 

          
Start: 3681155Stop: 3682105

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3795 translation of PA3795Homolog Bit Score 625.0

          
Other Homologs:  t_PA3795 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACACGCAAACTCGGCAACTCTGGCCTGGAGATACCGGCACTGGTATTCGGCGGCAACGTCTTCGGC 
TGGACTGCCGACGAAAGCACCTCCTTCAGGCTGCTGGACGCCCTGCTCGACGCCGGCCTGAACTGCATCGAC 
ACCGCCGACGTCTATTCGCGCTGGGTTCCCGGGCACCAGGGCGGCGAGTCGGAAACCCTCATCGGCAAGTGG 
CTGAAACGCACCGGCAAACGCGACCGCATGGTGATCGCCAGCAAGGTCGGGATGGACATGGGCAATGGCCAC 
AAAGGCCTATCCGCCGCCTATATCGAGCAGGCCCTGGAGCGCTCGCTACGACGCCTGCAGACCGACTACCTG 
GACCTCTACCAGTCGCACACCGACGATCCCCACACCGACCTGGAGGAAACCCTTTCCACCTATGGCGAACTG 
ATCAAGAAAGGCAAGGTACGGGTCATCGGCGCCTCCAACTACGACGCCCGGCGCCTCCTCGAAGCGCGCCAG 
GTCAGCGCCCGGCTTAACCTGCCGAGCTACCAGAGCCTGCAACCCGAATACAACCTGTACGATCGCGCCGAC 
TACGAGACCAACCTGGAGCCGACGGTGGAAGAACTCGGTATCGGGGTGATCAGCTACTACTCGCTGGCCAGC 
GGCTTCCTCAGCGGCAAGTACCGCAACCAGGCCGACACCGCCGGGCGAGCCCGGGGAGAGAAGGTGAAGGGT 
TATCTCAACGAGCGCGGCGTGGCCATCCTCGCGGCGCTCGACGAAGTGGCCGAGCAGTACAACGCCAACCCG 
ACCCAGGTCGCCCTGGCCTGGCTCATCGCTCGCCCGACGGTGACCGCGCCGATCGCCAGCGCCACCAGCCTG 
GAACAGCTCGACGACCTGATCGCCGCCACCCACCTGAAGCTCGACGAACAGGCGATCCACCGCCTGGACAGC 
GCCAGCGCCTATTGA