ViewGene
Locus Name:
GeneID:
Location:

GeneID:2307
TrivialName: PA14_32240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32240
PAO1 Ortholog Locus:PA2507
Sequence Length:933
Protein Length:310
Start: 2801756
Stop: 2802688
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05895.1|AE004678_1 (AE004678) catechol 1,2-dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 307/309 (99%), Positives = 308/309 (99%)
Sequence:
ATGACCGTGAAGATTTCCCAGACTGCCGACGTCCAGCGCTTCTTCGAAGAGGCCAGCGGCCAGCTCAACGAA
CGCGGCGATCCGCGCACCAAGGCCCTGGTGCGGCGCGTCCTCGACGACACGGCGAAGCTGATCGAAGAGATG
CAGGTCACGCCCGACGAATTCTGGAAAGCGGTGGACTACCTGAACCGCCTGGGCAGCCGCCAGGAAGCCGGC
CTGCTGGCCGCCGGGCTGGGCCTGGAGCATTACCTGGACCTGCTGCTCGACGCCCAGGACGCCGAGGCCGGC
CTCACCGGCGGCACGCCGCGCACCATCGAAGGGCCGCTGTACGTCGCCGGCGCGCCGCTAAGCGACGGCGAG
GCACGGATGGACGACGGCCGCGACCCCGGCACCGTGATGTTCCTCCAGggCCGCGTCAGCGGTCCCGACGGC
CAGCCGCTGGCCGGAGCCATCGTCGACGTCTGGCACGCCAATACCCAAGGCACCTATTCCTACTTCGACAGC
AGTCAGTCCGAATACAACCTGCGCCGGCGCATCCGCACCGACGCCGACGGCCGCTACCGTGCGCGCAGCATC
GTGcCCTCCGGCTACGGTTGCCCGAGCGACGGCCCGACCCAGGAACTGCTCGACCGCctCGGCCGCCACGGC
CAGCGGCCGGCGCACATCCACTTCTTCGTCTCGGCGCCCGGCCATCGCCACCTGACCACCCAGATCAACCTG
GCGGGCGACCGCTACCTGTGGGACGACTTCGCCTACGCCACCCGCGATGGGCTGATCGGCGACCTGCGCTTC
AACGACGATCCCGCCGCGGCCCGCGACCGCGGCGTGGAGGGCGGACGCTTCGCCGAACTGGATTTCGACTTC
CAGCTCCAGGCCAGCCCGGCGCCCGCCGCCGAGCGCCGCAGCCAGCGGCCGCGGGCATTGCAGGAGTAA
Translation:
MTVKISQTADVQRFFEEASGQLNERGDPRTKALVRRVLDDTAKLIEEMQVTPDEFWKAVDYLNRLGSRQEAG
LLAAGLGLEHYLDLLLDAQDAEAGLTGGTPRTIEGPLYVAGAPLSDGEARMDDGRDPGTVMFLQGRVSGPDG
QPLAGAIVDVWHANTQGTYSYFDSSQSEYNLRRRIRTDADGRYRARSIVPSGYGCPSDGPTQELLDRLGRHG
QRPAHIHFFVSAPGHRHLTTQINLAGDRYLWDDFAYATRDGLIGDLRFNDDPAAARDRGVEGGRFAELDFDF
QLQASPAPAAERRSQRPRALQE*
AnnotationID:2315GeneID:2307
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 08:08:08
Gene Name:catA
Confidence Code:1
GeneProduct:catechol 1,2-dioxygenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3485,pfam04444
Secondary Functional Category(ies):central intermediary metabolism
EC Number:1.13.11.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69310.1|AE016568_5 (AE016788) catechol 1,2-dioxygenase [Pseudomonas putida KT2440]
          Length = 311

 Score =  496 bits (1276), Expect = e-140
 Identities = 238/310 (76%), Positives = 268/310 (86%)

>gb|AAC46426.1| (AF009224) catechol 1,2-dioxygenase [Acinetobacter sp. ADP1]
          Length = 311

 Score =  345 bits (884), Expect = 3e-94
 Identities = 174/309 (56%), Positives = 217/309 (70%), Gaps = 4/309 (1%)

>gb|AAK55425.1| (AF380158) catechol 1,2-dioxygenase [Acinetobacter radioresistens]
          Length = 314

 Score =  338 bits (867), Expect = 2e-92
 Identities = 168/307 (54%), Positives = 219/307 (71%), Gaps = 4/307 (1%)








 
Structural Features:
COG3485, PcaH, Protocatechuate 3,4-dioxygenase beta subunit 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 226 residues,  96.0% aligned
Score =  152 bits (384), Expect = 6e-38
Identities = 72/243 (29%), Positives = 100/243 (41%), Gaps = 31/243 (12%)

pfam04444, Dioxygenase_N, Catechol dioxygenase N terminus. 
CD-Length = 74 residues, 100.0% aligned
Score =  102 bits (255), Expect = 7e-23
Identities = 45/75 (60%), Positives = 52/75 (69%), Gaps = 1/75 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4617




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21763




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33055




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2307_cdd.html


    		




 
URL:

















    ReferenceID:34502




  
Author/Investigator(s):
        Kukor JJ, Olsen RH, Ballou DP.





  
Title:
        Cloning and expression of the catA and catBC gene clusters from Pseudomonas aeruginosa PAO.




  
PubMed:
        3139626


MedLine:
        




    
Source:
J Bacteriol. 1988 Oct;170(10):4458-65.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3139626

















    ReferenceID:34503




  
Author/Investigator(s):
        Matsumoto H, Nakazawa T, Ohta S, Terawaki Y.





  
Title:
        Chromosomal locations of catA, pobA, dcu and chu genes in Pseudomonas aeruginosa.




  
PubMed:
        6800884


MedLine:
        




    
Source:
Genet Res. 1981 Dec;38(3):251-66.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6800884









           
Homologs By Global Alignment 

           

       



     
Gene ID:2307
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3932
                           PA2507_tr
                           translation of PA2507
                           310
                           99.03
                           99.35
                           0
                           1609.0
     

     
     
119858
                           gb|AAG05895.1|AE004678_1
                           (AE004678) catechol 1,2-dioxygenase [Pseudomonas aeruginosa PAO1]
                           310
                           99.03
                           99.35
                           0
                           1609.0
     

     
     
119859
                           gb|AAN69310.1|AE016568_5
                           (AE016788) catechol 1,2-dioxygenase [Pseudomonas putida KT2440]
                           311
                           76.52
                           86.17
                           1
                           1276.0
     

     
     
119860
                           dbj|BAA07036.1|
                           (D37782) catechol 1,2-dioxygenase [Pseudomonas putida]
                           311
                           76.52
                           86.17
                           1
                           1276.0
     

     
     
119861
                           dbj|BAA07037.1|
                           (D37783) catechol 1,2-dioxygenase [Pseudomonas putida]
                           311
                           75.88
                           85.85
                           1
                           1268.0
     

     






      

          
GC ORFID: 45309How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2507Glimmer Score: 

          
Start: 2152168Stop: 2151236

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2507 translation of PA2507Homolog Bit Score 625.0

          
Other Homologs:  t_PA2507 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTGAAGATTTCCCAGACTGCCGACGTCCAGCGCTTCTTCGAAGAGGCCAGCGGCCAGCTCAACGAA 
CGCGGCGATCCGCGCACCAAGGCCCTGGTGCGGCGCGTCCTCGACGACACGGCGAAGCTGATCGAAGAGATG 
CAGGTCACGCCCGACGAATTCTGGAAAGCGGTGGACTACCTGAACCGCCTGGGCAGCCGCCAGGAAGCCGGC 
CTGCTGGCCGCCGGGCTGGGCCTGGAGCATTACCTGGACCTGCTGCTCGACGCCCAGGACGCCGAGGCCGGC 
CTCACCGGCGGCACGCCGCGCACCATCGAAGGGCCGCTGTACGTCGCCGGCGCGCCGCTAAGCGACGGCGAG 
GCACGGATGGACGACGGCCGCGACCCCGGCACCGTGATGTTCCTCCAGggCCGCGTCAGCGGTCCCGACGGC 
CAGCCGCTGGCCGGAGCCATCGTCGACGTCTGGCACGCCAATACCCAAGGCACCTATTCCTACTTCGACAGC 
AGTCAGTCCGAATACAACCTGCGCCGGCGCATCCGCACCGACGCCGACGGCCGCTACCGTGCGCGCAGCATC 
GTGcCCTCCGGCTACGGTTGCCCGAGCGACGGCCCGACCCAGGAACTGCTCGACCGCctCGGCCGCCACGGC 
CAGCGGCCGGCGCACATCCACTTCTTCGTCTCGGCGCCCGGCCATCGCCACCTGACCACCCAGATCAACCTG 
GCGGGCGACCGCTACCTGTGGGACGACTTCGCCTACGCCACCCGCGATGGGCTGATCGGCGACCTGCGCTTC 
AACGACGATCCCGCCGCGGCCCGCGACCGCGGCGTGGAGGGCGGACGCTTCGCCGAACTGGATTTCGACTTC 
CAGCTCCAGGCCAGCCCGGCGCCCGCCGCCGAGCGCCGCAGCCAGCGGCCGCGGGCATTGCAGGAGTAA