ViewGene
Locus Name:
GeneID:
Location:

GeneID:2306
TrivialName: PA14_36390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36390
PAO1 Ortholog Locus:PA2179
Sequence Length:951
Protein Length:316
Start: 3241906
Stop: 3242856
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05567.1|AE004645_1 (AE004645) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 314/316 (99%), Positives = 315/316 (99%)
Sequence:
ATGCCCAGCCTGAATGATCCGCGCCTGGACGTCCTGGTCAGCCTCGGCAACTGGTTGCGAGGCCAGGACTAC
CGTTTCGTCACCGTCACCCCGGCTACCCATGAGCGCGTCAACGCCCGCCCGGAAAACCGCATGGCCCGGGAC
CTGGCCGGCATCTTCGGCTGGAGCCGGGCATTCGCCGGGGAAAGCCTGCCGGCCGACTGGCTGACCCTTCTT
GCCGGCGCCGACCTGATCCGCCGCGAGGCGGACGGCTGGCGCAGCCAGGTGCGCGTCTCCAGCCTCGGCGAG
CAACTGTTCGTCCATTCGGCCTTCCCTACCCTGGCCGCCGACGCGGTGTTCTTCGGCCCCGACACCTACCGC
TTCGACCGGCTGATTCGCAGCCACCTGGCATCGTCCGATCCGGCACGCATCCGCCGTGCGGCGGATATCGGC
TGCGGCGCCGGCCCCGGCGCGATCCGCATCGCCATGGCCTGCCCGGACGCCGAAGTACACGGGCTGGATATC
AATCCGGCGGCGCTCGACCTGGCGCGGGTCAACGCGGCGCTGGCGGGGGTCGGTAACCTGACCCTGGCGCGT
AGCGACCTGCTGAGCCAGGCGCCCGGTCGCTTCGACCTGATCGTGGCCAACCCGCCCTATCTCCTGGATGCC
TCGGAGCGCGCCTACCGGCATGGTGGCGGGATGCTCGGCGCCGGGCTCTCGCTGGCAATCGTCGATGCCGCC
CTCGAGCGCCTGGAAGCCGGCGGCAGCCTGCTGCTGTATACCGGCGTGGCGATGGTCGAAGGCGGCGATCCG
TTCCTCGCCCGCATCCGCGAACGCCTGGCGTCTCGGGAGTGGGAGTGGGACTACCAGGAACTGGACCCGGAC
GTGTTCGCCGAAGAGTTGGACAGCCCCGCCTACCGCGAAGCCGAGCGGATCGCCGTGGTCGGCCTGCGGGTC
ACTCGTCGCGCCTGA
Translation:
MPSLNDPRLDVLVSLGNWLRGQDYRFVTVTPATHERVNARPENRMARDLAGIFGWSRAFAGESLPADWLTLL
AGADLIRREADGWRSQVRVSSLGEQLFVHSAFPTLAADAVFFGPDTYRFDRLIRSHLASSDPARIRRAADIG
CGAGPGAIRIAMACPDAEVHGLDINPAALDLARVNAALAGVGNLTLARSDLLSQAPGRFDLIVANPPYLLDA
SERAYRHGGGMLGAGLSLAIVDAALERLEAGGSLLLYTGVAMVEGGDPFLARIRERLASREWEWDYQELDPD
VFAEELDSPAYREAERIAVVGLRVTRRA*
AnnotationID:2314GeneID:2306
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:03
Gene Name:
Confidence Code:3
GeneProduct:putative methylase
Cell Localization:()
Synonyms:PA2179
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2890
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68859.1|AE016518_5 (AE016786) modification methylase, HemK family [Pseudomonas putida
           KT2440]
          Length = 316

 Score =  312 bits (800), Expect = 1e-84
 Identities = 171/303 (56%), Positives = 198/303 (65%), Gaps = 1/303 (0%)






 
Structural Features:
COG2890, HemK, Methylase of polypeptide chain release factors 
[Translation, ribosomal structure and biogenesis]
CD-Length = 280 residues,  99.6% aligned
Score =  116 bits (292), Expect = 3e-27
Identities = 72/304 (23%), Positives = 108/304 (35%), Gaps = 31/304 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4615




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21761




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38060




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2306_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2306
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3931
                           PA2179_tr
                           translation of PA2179
                           316
                           99.36
                           99.68
                           0
                           1612.0
     

     
     
119855
                           gb|AAG05567.1|AE004645_1
                           (AE004645) hypothetical protein PA2179 [Pseudomonas aeruginosa PAO1]
                           316
                           99.36
                           99.68
                           0
                           1612.0
     

     
     
119857
                           gb|AAN68859.1|AE016518_5
                           (AE016786) modification methylase, HemK family [Pseudomonas putida KT2440]
                           319
                           53.91
                           63.32
                           6
                           794.0
     

     
     
119856
                           gb|AAO58978.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           326
                           51.84
                           63.80
                           12
                           807.0
     

     






      

          
GC ORFID: 45308How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2179Glimmer Score: 

          
Start: 1712009Stop: 1711059

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2179 translation of PA2179Homolog Bit Score 625.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2943 (ORF: BLASTX 305.0), t_PA2179 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAGCCTGAATGATCCGCGCCTGGACGTCCTGGTCAGCCTCGGCAACTGGTTGCGAGGCCAGGACTAC 
CGTTTCGTCACCGTCACCCCGGCTACCCATGAGCGCGTCAACGCCCGCCCGGAAAACCGCATGGCCCGGGAC 
CTGGCCGGCATCTTCGGCTGGAGCCGGGCATTCGCCGGGGAAAGCCTGCCGGCCGACTGGCTGACCCTTCTT 
GCCGGCGCCGACCTGATCCGCCGCGAGGCGGACGGCTGGCGCAGCCAGGTGCGCGTCTCCAGCCTCGGCGAG 
CAACTGTTCGTCCATTCGGCCTTCCCTACCCTGGCCGCCGACGCGGTGTTCTTCGGCCCCGACACCTACCGC 
TTCGACCGGCTGATTCGCAGCCACCTGGCATCGTCCGATCCGGCACGCATCCGCCGTGCGGCGGATATCGGC 
TGCGGCGCCGGCCCCGGCGCGATCCGCATCGCCATGGCCTGCCCGGACGCCGAAGTACACGGGCTGGATATC 
AATCCGGCGGCGCTCGACCTGGCGCGGGTCAACGCGGCGCTGGCGGGGGTCGGTAACCTGACCCTGGCGCGT 
AGCGACCTGCTGAGCCAGGCGCCCGGTCGCTTCGACCTGATCGTGGCCAACCCGCCCTATCTCCTGGATGCC 
TCGGAGCGCGCCTACCGGCATGGTGGCGGGATGCTCGGCGCCGGGCTCTCGCTGGCAATCGTCGATGCCGCC 
CTCGAGCGCCTGGAAGCCGGCGGCAGCCTGCTGCTGTATACCGGCGTGGCGATGGTCGAAGGCGGCGATCCG 
TTCCTCGCCCGCATCCGCGAACGCCTGGCGTCTCGGGAGTGGGAGTGGGACTACCAGGAACTGGACCCGGAC 
GTGTTCGCCGAAGAGTTGGACAGCCCCGCCTACCGCGAAGCCGAGCGGATCGCCGTGGTCGGCCTGCGGGTC 
ACTCGTCGCGCCTGA