ViewGene
Locus Name:
GeneID:
Location:

GeneID:2305
TrivialName: PA14_39810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39810
PAO1 Ortholog Locus:PA1911
Sequence Length:951
Protein Length:316
Start: 3546906
Stop: 3547856
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05299.1|AE004617_3 (AE004617) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 313/316 (99%), Positives = 315/316 (99%)
Sequence:
ATGAATTCCGCGGGCGAAGGCCGGATTCCCTCGCCGATCCTCGACGAGGCCGCCGAGTGGCTGGTGCGCCTG
CAGGACAGCGGCTGCACCGACGACACGCGCCAGGCCTGCGCCCAGTGGCGGCAGCGCAGCCCACAGCACGCC
CATGCCTGGGAGCGCGCCGAGCGCCTGCTGCAATGCCTCGGCCGACTGCCGCCGGCGCTGGCCCTGCCGACC
CTCGGCCGCGAGCGCGGGCTGGACCGGCGGCGCGCGATCAAGCACCTCGCCCTGGTCCTCGGCGGCGCCTCG
CTGGGGCTCGCCACCTGGCAGGCCGAGCCGTTGCGCGACTGGCTGGCCGACCAGCGCACCGGCGTCGGCGAA
CAGCGCCGCCTGACCCTGCCCGACGGCAGCCTGCTGACCCTGAACACCGACAGCGCCGTGGACCTGGCCTTC
GACGCCAGCCAGCGGCTGGTACGCCTGCTGCGCGGCGAGATCTTCGTCGATAGCCGCGCCGACCCGCGTCCG
TTCCGCGTCGCCACCGCCGAAGCGCGGCTGCATGCCGGTGCCGCCCGCTTCAACGTACGCCAGGAGATGGCC
GCGACCCGGGTCGCGGTACTCGCCGGGCGGGTCGAACTGAGCCCGCTCCACGGACGCGGGCGCTGGCTGGAA
AGCGGCGAGTCGGTGCGCCTGGGCGCCGACGGCGAAGCGCGCCGGCTGGCCTTCGACGGCCTGCCGGACGCC
TGGACCCGCGGCATGCTGATGGCCGACCGGATGCCGCTGGCCGAGGTGCTCGCCGAACTCGCCCGCTACCGT
CGCGGCTTACTGCGCTGCGACCCGCAACTGGCCAGGCTGGCGGTGTCGGGCGCCTATCCGCTGCTGGACCTG
CGGCGCACGCTGGGCATGCTGCAGGCCACCTATCCGCTGAAGGTGCGCGGGGTGACCGACTACTGGATCAGC
CTGGTGCCGGCGTGA
Translation:
MNSAGEGRIPSPILDEAAEWLVRLQDSGCTDDTRQACAQWRQRSPQHAHAWERAERLLQCLGRLPPALALPT
LGRERGLDRRRAIKHLALVLGGASLGLATWQAEPLRDWLADQRTGVGEQRRLTLPDGSLLTLNTDSAVDLAF
DASQRLVRLLRGEIFVDSRADPRPFRVATAEARLHAGAARFNVRQEMAATRVAVLAGRVELSPLHGRGRWLE
SGESVRLGADGEARRLAFDGLPDAWTRGMLMADRMPLAEVLAELARYRRGLLRCDPQLARLAVSGAYPLLDL
RRTLGMLQATYPLKVRGVTDYWISLVPA*
AnnotationID:2313GeneID:2305
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 10:10:22
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:PA1911
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85009.1| (BX321859) putative transmembrane sensor [Nitrosomonas europaea
           ATCC 19718]
          Length = 328

 Score =  268 bits (686), Expect = 2e-71
 Identities = 148/321 (46%), Positives = 197/321 (61%), Gaps = 7/321 (2%)

>gb|AAN68693.1|AE016498_6 (AE016785) transmembrane sensor, putative [Pseudomonas putida
           KT2440]
          Length = 321

 Score =  235 bits (600), Expect = 2e-61
 Identities = 136/315 (43%), Positives = 177/315 (56%), Gaps = 7/315 (2%)







 
Structural Features:
pfam04773, FecR, FecR protein. FecR is involved in 
regulation of iron dicitrate transport. 
CD-Length = 323 residues, 100.0% aligned
Score =  275 bits (704), Expect = 5e-75
Identities = 165/323 (51%), Positives = 191/323 (59%), Gaps = 13/323 (4%)

OG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / 
Signal transduction mechanisms]
CD-Length = 322 residues, 100.0% aligned
Score =  249 bits (636), Expect = 4e-67
Identities = 152/322 (47%), Positives = 180/322 (55%), Gaps = 6/322 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4613




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21759




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37038




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2305_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2305
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3928
                           PA1911_tr
                           translation of PA1911
                           316
                           99.05
                           99.68
                           0
                           1613.0
     

     
     
119846
                           gb|AAG05299.1|AE004617_3
                           (AE004617) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           316
                           99.05
                           99.68
                           0
                           1613.0
     

     
     
119847
                           emb|CAD85009.1|
                           (BX321859) putative transmembrane sensor [Nitrosomonas europaea ATCC 19718]
                           335
                           44.77
                           60.00
                           26
                           694.0
     

     
     
119849
                           gb|AAG07287.1|AE004807_6
                           (AE004807) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           330
                           43.33
                           56.36
                           27
                           614.0
     

     
     
3929
                           PA3900_tr
                           translation of PA3900
                           330
                           43.33
                           56.36
                           27
                           614.0
     

     






      

          
GC ORFID: 45307How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1911Glimmer Score: 

          
Start: 1407005Stop: 1406055

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1911 translation of PA1911Homolog Bit Score 625.0

          
Other Homologs:  t_PA3900 (ORF: BLASTX 235.0), t_PA4895 (ORF: BLASTX 211.0), t_PA1911 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTCCGCGGGCGAAGGCCGGATTCCCTCGCCGATCCTCGACGAGGCCGCCGAGTGGCTGGTGCGCCTG 
CAGGACAGCGGCTGCACCGACGACACGCGCCAGGCCTGCGCCCAGTGGCGGCAGCGCAGCCCACAGCACGCC 
CATGCCTGGGAGCGCGCCGAGCGCCTGCTGCAATGCCTCGGCCGACTGCCGCCGGCGCTGGCCCTGCCGACC 
CTCGGCCGCGAGCGCGGGCTGGACCGGCGGCGCGCGATCAAGCACCTCGCCCTGGTCCTCGGCGGCGCCTCG 
CTGGGGCTCGCCACCTGGCAGGCCGAGCCGTTGCGCGACTGGCTGGCCGACCAGCGCACCGGCGTCGGCGAA 
CAGCGCCGCCTGACCCTGCCCGACGGCAGCCTGCTGACCCTGAACACCGACAGCGCCGTGGACCTGGCCTTC 
GACGCCAGCCAGCGGCTGGTACGCCTGCTGCGCGGCGAGATCTTCGTCGATAGCCGCGCCGACCCGCGTCCG 
TTCCGCGTCGCCACCGCCGAAGCGCGGCTGCATGCCGGTGCCGCCCGCTTCAACGTACGCCAGGAGATGGCC 
GCGACCCGGGTCGCGGTACTCGCCGGGCGGGTCGAACTGAGCCCGCTCCACGGACGCGGGCGCTGGCTGGAA 
AGCGGCGAGTCGGTGCGCCTGGGCGCCGACGGCGAAGCGCGCCGGCTGGCCTTCGACGGCCTGCCGGACGCC 
TGGACCCGCGGCATGCTGATGGCCGACCGGATGCCGCTGGCCGAGGTGCTCGCCGAACTCGCCCGCTACCGT 
CGCGGCTTACTGCGCTGCGACCCGCAACTGGCCAGGCTGGCGGTGTCGGGCGCCTATCCGCTGCTGGACCTG 
CGGCGCACGCTGGGCATGCTGCAGGCCACCTATCCGCTGAAGGTGCGCGGGGTGACCGACTACTGGATCAGC 
CTGGTGCCGGCGTGA