ViewGene

Locus Name:
GeneID:
Location:

GeneID:2304
TrivialName: PA14_42150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42150
PAO1 Ortholog Locus:PA1731
Sequence Length:954
Protein Length:317
Start: 3760787
Stop: 3759834
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05120.1|AE004599_5 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 317/317 (100%), Positives = 317/317 (100%)
Sequence:
ATGCTCAGCCGGACCGCTTCCGACCTGTACTGGATGTCGCGCTACCTGGAACGCGCGGAGAACCTCGCCCGC
ATGCTCGACGTCAGCTACTCGCTGTCGCTGTTGCCGCAGGACCGCAACGGCGGCGGCCTGGACGAACTGGCC
ATGCCGCTGCTGATCACCGGCACCCTCGACGCCTACCTGGAGCGCCACGGCGAACTGGCCGCCGAGCGCCTG
CTGAGTTTCTTCGCCCTCGACCCGGACAACCCGGCGAGCATCTACAGCTGCCTGGCTGCAGCGCGCGCCAGT
GCCCATGCGGTACGCGGGCGGATCACCCTGGACATGTGGGAGAACATCAACGCCACCTGGCTGGAAATGCGC
GGCATCGCCGCCGAGGGCATCCTGCGCTATGGCATCAGTCGTTTCTGCGAATGGGTGAAGGACCGCTCGCAC
CTGTTCCGCGGCGCGACCTTCGCCACCAGCATGCGCAACGATGCGTTCCGCTTCATCCGTCTCGGAACCTTC
ATCGAACGCGCCGACAATACCTTGCGCCTGCTCGATGCGCGCTACCAGACCCAGGGCGAAGCGGCGCTCGCC
GGGGCGGACGAGGGCACCGCGCGCGGCTACTACCAGTGGAGCGCGCTGCTGCGGGCGCTATCCGCCTTCGAG
GGCTACACCGAGCTGTACCGCGCCTCGCCCAACGCGCGCAACATCGCCGAATTGCTGCTGTTGCGCGAGGAC
GTGCCACGTTCGCTGCTGTCCTGCATCGAGGAACTGAGCGAGATCCTTTCCGGCCTGCCCGGCGTCAACGGC
CGGCCGGCGCAGCGCCTGGCCGCCGAGCTGGAGGCGCGGGTGCGCTACACCGGCATCGACGAGGTGCTGGAA
CAGGGCCTGCATACCTGGATCACCGACTACATCCTGCTGGTTCGCCAGTTGGCCAACGCCATTCACAGCTCC
TACCTGGAGGCCGCATGA
Translation:
MLSRTASDLYWMSRYLERAENLARMLDVSYSLSLLPQDRNGGGLDELAMPLLITGTLDAYLERHGELAAERL
LSFFALDPDNPASIYSCLAAARASAHAVRGRITLDMWENINATWLEMRGIAAEGILRYGISRFCEWVKDRSH
LFRGATFATSMRNDAFRFIRLGTFIERADNTLRLLDARYQTQGEAALAGADEGTARGYYQWSALLRALSAFE
GYTELYRASPNARNIAELLLLREDVPRSLLSCIEELSEILSGLPGVNGRPAQRLAAELEARVRYTGIDEVLE
QGLHTWITDYILLVRQLANAIHSSYLEAA*
AnnotationID:2312GeneID:2304
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1731
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4611
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21757
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37127
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2304_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2304

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3927 PA1731_tr translation of PA1731 317 99.99 99.99 0 1612.0
119841 gb|AAG05120.1|AE004599_5 (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 317 99.99 99.99 0 1612.0
119842 gb|AAO55578.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 320 74.68 87.50 4 1264.0
119843 gb|AAN68295.1|AE016463_9 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 317 69.40 82.01 1 1138.0
119844 emb|CAD14824.1| (AL646062) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 323 44.27 61.91 13 686.0
GC ORFID: 45306How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1731Glimmer Score:
Start: 1193122Stop: 1194075
Length: 954
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1731 translation of PA1731Homolog Bit Score 625.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene873 (ORF: BLASTX 487.0), t_PA1731 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCAGCCGGACCGCTTCCGACCTGTACTGGATGTCGCGCTACCTGGAACGCGCGGAGAACCTCGCCCGC
ATGCTCGACGTCAGCTACTCGCTGTCGCTGTTGCCGCAGGACCGCAACGGCGGCGGCCTGGACGAACTGGCC
ATGCCGCTGCTGATCACCGGCACCCTCGACGCCTACCTGGAGCGCCACGGCGAACTGGCCGCCGAGCGCCTG
CTGAGTTTCTTCGCCCTCGACCCGGACAACCCGGCGAGCATCTACAGCTGCCTGGCTGCAGCGCGCGCCAGT
GCCCATGCGGTACGCGGGCGGATCACCCTGGACATGTGGGAGAACATCAACGCCACCTGGCTGGAAATGCGC
GGCATCGCCGCCGAGGGCATCCTGCGCTATGGCATCAGTCGTTTCTGCGAATGGGTGAAGGACCGCTCGCAC
CTGTTCCGCGGCGCGACCTTCGCCACCAGCATGCGCAACGATGCGTTCCGCTTCATCCGTCTCGGAACCTTC
ATCGAACGCGCCGACAATACCTTGCGCCTGCTCGATGCGCGCTACCAGACCCAGGGCGAAGCGGCGCTCGCC
GGGGCGGACGAGGGCACCGCGCGCGGCTACTACCAGTGGAGCGCGCTGCTGCGGGCGCTATCCGCCTTCGAG
GGCTACACCGAGCTGTACCGCGCCTCGCCCAACGCGCGCAACATCGCCGAATTGCTGCTGTTGCGCGAGGAC
GTGCCACGTTCGCTGCTGTCCTGCATCGAGGAACTGAGCGAGATCCTTTCCGGCCTGCCCGGCGTCAACGGC
CGGCCGGCGCAGCGCCTGGCCGCCGAGCTGGAGGCGCGGGTGCGCTACACCGGCATCGACGAGGTGCTGGAA
CAGGGCCTGCATACCTGGATCACCGACTACATCCTGCTGGTTCGCCAGTTGGCCAACGCCATTCACAGCTCC
TACCTGGAGGCCGCATGA