ViewGene
Locus Name:
GeneID:
Location:

GeneID:2303
TrivialName: PA14_62290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62290
PAO1 Ortholog Locus:PA4707
Sequence Length:984
Protein Length:327
Start: 5558950
Stop: 5557967
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08093.1|AE004884_11 (AE004884) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 327/327 (100%), Positives = 327/327 (100%)
Sequence:
GTGTTGGTCCTCTGGTTGTCCCTCGCCCTCGGTCCCGTCAGCCTGCCGCTGGGCGATACCCTGCGCGCCGCG
CTGCGCCTGGCCGGGCTGCCGCTCGATGGAACGGGCCTGGCCCAGGCGGAAATGATCCTCGGCCAGATCCGC
CTGCCGCGGACCCTGCTCGGCCTGGCCGTGGGCGCGGTGCTGGCGCTGTCCGGGGTGGCGATGCAGGGCCTG
TTCCGCAACCCGCTGGCCGATCCAGGGCTGGTCGGGGTGTCCAGCGGCGCGGCCCTCGGCGCGGCGCTGGCC
ATCGTATTCGGCGCCTCGCTGGGCGGCTTGCCGGCGTTCCTCGCGCCTTACCTGCTGTCGCTGTGCGCCTTC
GGCGGCGGCCTGGGGGTGACCTGGCTGGTCTATCGGCTTGGCCGCCGCGATGGCCAGACCAGCGTGGCCACC
ATGTTGTTGGCAGGGATCGCCTTGACCGCACTGTCCGGCGCGGTGATCGGACTGTTTACCTATCTCGCCGAT
GACGCCACCTTGCGTACCCTGACCTTCTGGAACCTGGGCAGCCTGAACGGCGCCAGCTACCCACGACTCTGG
CCGCTGCTGCTGGTGGCGCTGCTGGTGGCCTGCTGGCTACCGCGCCGGGCAGATGCGCTGAACGCACTGCTG
CTCGGCGAGTCCGAGGCCCGTCACCTGGGCTTCGACGTCGAGCGATTGAAGGCCGAACTGGTGCTTTGCACT
GCCCTCGGCGTCGGCGCCGCAGTGGCGGCGGCGGGGATGATCGGCTTCATCGGCCTGGTGGTGCCGCACCTG
ATCCGTCTGGTTGCCGGTCCGGATCATCGGACGTTGCTGCCGGCCTCGATGATGGCCGGCGCCATTCTCCTG
CTGCTTGCCGACCTGCTGGCGCGCCTGGCGCTGGCTCCGGCGGAGTTGCCGATCGGCATCGTCACGGCACTG
ATCGGCGCGCCGTTCTTCCTTTATCTGCTATTGCGGGGGCGGGCCTGA
Translation:
MLVLWLSLALGPVSLPLGDTLRAALRLAGLPLDGTGLAQAEMILGQIRLPRTLLGLAVGAVLALSGVAMQGL
FRNPLADPGLVGVSSGAALGAALAIVFGASLGGLPAFLAPYLLSLCAFGGGLGVTWLVYRLGRRDGQTSVAT
MLLAGIALTALSGAVIGLFTYLADDATLRTLTFWNLGSLNGASYPRLWPLLLVALLVACWLPRRADALNALL
LGESEARHLGFDVERLKAELVLCTALGVGAAVAAAGMIGFIGLVVPHLIRLVAGPDHRTLLPASMMAGAILL
LLADLLARLALAPAELPIGIVTALIGAPFFLYLLLRGRA*
AnnotationID:2311GeneID:2303
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 05:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:phuU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative heme/hemin ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:pfam01032,COG0609,COG4139
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70261.1|AE016666_5 (AE016791) heme/hemin ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 345

 Score =  524 bits (1350), Expect = e-148
 Identities = 269/326 (82%), Positives = 293/326 (89%)

>gb|AAN56659.1|AE015802_5 (AE015802) hemin ABC transporter, permease protein [Shewanella
           oneidensis MR-1]
          Length = 338

 Score =  325 bits (834), Expect = 2e-88
 Identities = 177/322 (54%), Positives = 227/322 (70%), Gaps = 7/322 (2%)

>gb|AAO08469.1|AE016813_221 (AE016813) ABC-type Fe3+-siderophore transport system, permease
           component [Vibrio vulnificus CMCP6]
          Length = 343

 Score =  314 bits (805), Expect = 4e-85
 Identities = 169/319 (52%), Positives = 228/319 (71%), Gaps = 7/319 (2%)








 
Structural Features:
pfam01032, FecCD, FecCD transport family.
CD-Length = 301 residues,  95.0% aligned
Score =  215 bits (548), Expect = 9e-57
Identities = 141/291 (48%), Positives = 185/291 (63%), Gaps = 5/291 (1%)

COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 334 residues,  96.1% aligned
Score =  203 bits (518), Expect = 2e-53
Identities = 158/327 (48%), Positives = 210/327 (64%), Gaps = 8/327 (2%)

COG4139, BtuC, ABC-type cobalamin transport system, permease component 
[Coenzyme metabolism]
CD-Length = 326 residues,  85.3% aligned
Score =  194 bits (493), Expect = 2e-50
Identities = 134/287 (46%), Positives = 178/287 (62%), Gaps = 9/287 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14563




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21755




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37628




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2303_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2303
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3924
                           PA4707_tr
                           translation of PA4707
                           327
                           99.99
                           99.99
                           0
                           1614.0
     

     
     
119737
                           gb|AAG08093.1|AE004884_11
                           (AE004884) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           327
                           99.69
                           99.99
                           0
                           1611.0
     

     
     
119738
                           gb|AAC13286.1|
                           (AF055999) ABC-type permease [Pseudomonas aeruginosa]
                           327
                           98.16
                           98.77
                           1
                           1572.0
     

     
     
119739
                           gb|AAN70261.1|AE016666_5
                           (AE016791) heme/hemin ABC transporter, permease protein [Pseudomonas putida KT2440]
                           345
                           77.97
                           84.92
                           18
                           1349.0
     

     
     
119757
                           emb|CAE40721.1|
                           (BX640411) putative hemin permease [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           331
                           53.47
                           64.65
                           24
                           760.0
     

     






      

          
GC ORFID: 45305How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4707Glimmer Score: 

          
Start: 4822630Stop: 4821647

          
Length: 984


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4707 translation of PA4707Homolog Bit Score 626.0

          
Other Homologs:  t_PA2914 (ORF: BLASTX 218.0), psyr_15may02_Scaffold2_revised_gene3598 (ORF: BLASTX 179.0), t_PA4707 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTGGTCCTCTGGTTGTCCCTCGCCCTCGGTCCCGTCAGCCTGCCGCTGGGCGATACCCTGCGCGCCGCG 
CTGCGCCTGGCCGGGCTGCCGCTCGATGGAACGGGCCTGGCCCAGGCGGAAATGATCCTCGGCCAGATCCGC 
CTGCCGCGGACCCTGCTCGGCCTGGCCGTGGGCGCGGTGCTGGCGCTGTCCGGGGTGGCGATGCAGGGCCTG 
TTCCGCAACCCGCTGGCCGATCCAGGGCTGGTCGGGGTGTCCAGCGGCGCGGCCCTCGGCGCGGCGCTGGCC 
ATCGTATTCGGCGCCTCGCTGGGCGGCTTGCCGGCGTTCCTCGCGCCTTACCTGCTGTCGCTGTGCGCCTTC 
GGCGGCGGCCTGGGGGTGACCTGGCTGGTCTATCGGCTTGGCCGCCGCGATGGCCAGACCAGCGTGGCCACC 
ATGTTGTTGGCAGGGATCGCCTTGACCGCACTGTCCGGCGCGGTGATCGGACTGTTTACCTATCTCGCCGAT 
GACGCCACCTTGCGTACCCTGACCTTCTGGAACCTGGGCAGCCTGAACGGCGCCAGCTACCCACGACTCTGG 
CCGCTGCTGCTGGTGGCGCTGCTGGTGGCCTGCTGGCTACCGCGCCGGGCAGATGCGCTGAACGCACTGCTG 
CTCGGCGAGTCCGAGGCCCGTCACCTGGGCTTCGACGTCGAGCGATTGAAGGCCGAACTGGTGCTTTGCACT 
GCCCTCGGCGTCGGCGCCGCAGTGGCGGCGGCGGGGATGATCGGCTTCATCGGCCTGGTGGTGCCGCACCTG 
ATCCGTCTGGTTGCCGGTCCGGATCATCGGACGTTGCTGCCGGCCTCGATGATGGCCGGCGCCATTCTCCTG 
CTGCTTGCCGACCTGCTGGCGCGCCTGGCGCTGGCTCCGGCGGAGTTGCCGATCGGCATCGTCACGGCACTG 
ATCGGCGCGCCGTTCTTCCTTTATCTGCTATTGCGGGGGCGGGCCTGA