ViewGene
Locus Name:
GeneID:
Location:

GeneID:2302
TrivialName: PA14_16910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16910
PAO1 Ortholog Locus:PA3669
Sequence Length:981
Protein Length:326
Start: 1449535
Stop: 1450515
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07057.1|AE004786_9 (AE004786) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 318/326 (97%), Positives = 319/326 (97%)
Sequence:
ATGCGGCGCAATACGCTGATCGTCCTGCTGGCGCTGGTGGCGGCGCTGGCCGGAACcTTCGCCTGGCTGCAG
CGCGAGCGCGCAGCCGAGGTACCTGCCTTGCCGGCGGCAGAGCGCTGGCTGCCGGAACTGGACAGCGCGACG
CTGAGTGGTCTGCACATGCAGTTTGCCGACGGTTCGCCGGATATCCGGGTCGAGCGGCGTGCGGGCGCGTGG
GTCCTGCCGGCCAAGGCCGACTATCCGGCCGACCGGCTACGCTTGTCGGCGCTGCTCGAGGCGTTGGCAGAG
GCGCGCAAGGTCGAGGCGAAGAGCGCCAACCCGAAGAACCACGCGCTGCTTGGCCTGGCGGAGCGTGGCGAG
GGGCAGGCGCTACGCCTGAGCCTGCATTGGCAGTCCGGCGAGTCTCTGGTGCTGCTGGTGGGCAAGGATGCG
CAGCATGGCGGTAGCTTCGTACGACGATTGGGCGACCCGCAGGCCTGGCTGATCGACAAGCGGCTGCCGTTG
CCGAACAACGAGCTGGAGTGGCTCGACCGGCGGATCGCCACGCTGCCCTTCGCCCGGGTGCGCGAACTGCAA
CTGCGCTATCCGAAGGGCGAACGCCTGGATCTCTATCGCGACGACGCCGGGCAGCCGAACCTGCAGGTTCGG
CAATTGCCCACAGGGCGCAAGCTGGCCTATGAGGCAGCGGCCAACGGCGCGGCGACGCTGTTCGCCGACCTG
CGTTTCGCCGATGTAGCGCCGCTGGCGCAGGTGGGATTCAGACAGGCGCCATTGCTCCTGGTGTTCAGCCTG
CGGACGTTTTCCGGCGCGCGCCTGGATGGCGAGATTCGGCGCCAGGGCGAGCAATACTGGTTGTTGCCGAAG
AGCGTCGAGGGCTTCGCCGAGGGCGAGGTCGCCGCCCATCCTGACTGGGCCTATCGGATCGAAGAGGACCGC
TACCGCGCCCTGGCCCGGCACCTGCCGGAGCTGCTGGCGCGCTGA
Translation:
MRRNTLIVLLALVAALAGTFAWLQRERAAEVPALPAAERWLPELDSATLSGLHMQFADGSPDIRVERRAGAW
VLPAKADYPADRLRLSALLEALAEARKVEAKSANPKNHALLGLAERGEGQALRLSLHWQSGESLVLLVGKDA
QHGGSFVRRLGDPQAWLIDKRLPLPNNELEWLDRRIATLPFARVRELQLRYPKGERLDLYRDDAGQPNLQVR
QLPTGRKLAYEAAANGAATLFADLRFADVAPLAQVGFRQAPLLLVFSLRTFSGARLDGEIRRQGEQYWLLPK
SVEGFAEGEVAAHPDWAYRIEEDRYRALARHLPELLAR*
AnnotationID:2310GeneID:2302
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 09:09:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3669
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21753




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2302
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3922
                           PA3669_tr
                           translation of PA3669
                           326
                           97.54
                           97.85
                           0
                           1615.0
     

     
     
119735
                           gb|AAG07057.1|AE004786_9
                           (AE004786) hypothetical protein PA3669 [Pseudomonas aeruginosa PAO1]
                           326
                           97.54
                           97.85
                           0
                           1615.0
     

     
     
3923
                           PA4040_tr
                           translation of PA4040
                           350
                           37.71
                           52.00
                           39
                           532.0
     

     
     
119736
                           gb|AAG07427.1|AE004820_12
                           (AE004820) hypothetical protein PA4040 [Pseudomonas aeruginosa PAO1]
                           350
                           37.71
                           52.00
                           39
                           532.0
     

     






      

          
GC ORFID: 45304How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3669Glimmer Score: 

          
Start: 3504402Stop: 3503422

          
Length: 981


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3669 translation of PA3669Homolog Bit Score 626.0

          
Other Homologs:  t_PA4040 (ORF: BLASTX 209.0), t_PA3669 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCGCAATACGCTGATCGTCCTGCTGGCGCTGGTGGCGGCGCTGGCCGGAACcTTCGCCTGGCTGCAG 
CGCGAGCGCGCAGCCGAGGTACCTGCCTTGCCGGCGGCAGAGCGCTGGCTGCCGGAACTGGACAGCGCGACG 
CTGAGTGGTCTGCACATGCAGTTTGCCGACGGTTCGCCGGATATCCGGGTCGAGCGGCGTGCGGGCGCGTGG 
GTCCTGCCGGCCAAGGCCGACTATCCGGCCGACCGGCTACGCTTGTCGGCGCTGCTCGAGGCGTTGGCAGAG 
GCGCGCAAGGTCGAGGCGAAGAGCGCCAACCCGAAGAACCACGCGCTGCTTGGCCTGGCGGAGCGTGGCGAG 
GGGCAGGCGCTACGCCTGAGCCTGCATTGGCAGTCCGGCGAGTCTCTGGTGCTGCTGGTGGGCAAGGATGCG 
CAGCATGGCGGTAGCTTCGTACGACGATTGGGCGACCCGCAGGCCTGGCTGATCGACAAGCGGCTGCCGTTG 
CCGAACAACGAGCTGGAGTGGCTCGACCGGCGGATCGCCACGCTGCCCTTCGCCCGGGTGCGCGAACTGCAA 
CTGCGCTATCCGAAGGGCGAACGCCTGGATCTCTATCGCGACGACGCCGGGCAGCCGAACCTGCAGGTTCGG 
CAATTGCCCACAGGGCGCAAGCTGGCCTATGAGGCAGCGGCCAACGGCGCGGCGACGCTGTTCGCCGACCTG 
CGTTTCGCCGATGTAGCGCCGCTGGCGCAGGTGGGATTCAGACAGGCGCCATTGCTCCTGGTGTTCAGCCTG 
CGGACGTTTTCCGGCGCGCGCCTGGATGGCGAGATTCGGCGCCAGGGCGAGCAATACTGGTTGTTGCCGAAG 
AGCGTCGAGGGCTTCGCCGAGGGCGAGGTCGCCGCCCATCCTGACTGGGCCTATCGGATCGAAGAGGACCGC 
TACCGCGCCCTGGCCCGGCACCTGCCGGAGCTGCTGGCGCGCTGA