ViewGene
Locus Name:
GeneID:
Location:

GeneID:2301
TrivialName: PA14_37420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37420
PAO1 Ortholog Locus:PA2094
Sequence Length:957
Protein Length:318
Start: 3331559
Stop: 3330603
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05482.1|AE004637_2 (AE004637) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 316/318 (99%), Positives = 317/318 (99%)
Sequence:
ATGAGCGAGAAGCCGGAACGGCAACGCATCGTCGAGGAGGCCATCGAATGGATGGTGCGCCTGCAATCCGGC
GACTTCAGCGCCGCCGAGGGCGATGCCCTGGAACGCTGGAAGGCGCTGTCGAGCGAGCATGCCGAGGTGTTC
CGGCAACTGCTTGGCAGCCTCGCGCCGCTACAGGACTCGCCCTGGCGCGGCCAGCCGAGCGCTACCGTGCTG
CGCGCCCTGGAGCAGCCGTCGAGCCGCCGGCGCTTCGTCGGCGGCGCCCTCGGGCTGTTCGTCCTGCTCGCC
GGCGGAGCCGGCCTGGAGCGCTGGGTCCAGGCCGGCATGGGCCTGCCCGGCGAACTGGCGACCGGCACCGGC
GAGCGCCGCGACTGGTTGCTGGCCGACGGCAGCCGCCTGCGCCTGAACGCGCGGAGCAAGGCGCGACCGCTG
CTCGACGGCGCCCAGCGACGCCTGGAGCTGCGGCGCGGCGCGTTGCGCCTGGAAGTGAAGGAGGACCCGCGC
GGCGCCTTCGCTCTCGACTGCGCCGCCGGACGGGTGGACTGCGCCAGCGGCAGCCTGCTGCTTGCCGAGGAG
CGCGGGGCGATCCGCCTGGTGACCCTGCGCGGCAGCGCGCGGCTGACCACCGGCGAGGGACGCCAGCTGGCG
GTGGCGGCACGACGCAGCCTGCTGTTCGACGCCGGCGGCCTGCTCGAACAGGGCCCGATGCAGGCCGGAGAG
GATGCCTGGGCCAGCGGCTGGCTGGAGGTCCACGACCGTTCCCTGGCCTGGGTCGCGGAGGCCTTCCGGCCC
TATCTGCCAGGCATCCTCCAGCTCGACGCGGAGATCGCCGGCAACCGCGTCAGCGGTCTGTTCCCGCTGGAC
GACATGCACACGTCCCTGGACATGCTCGGGCGCAGCCTGCCGATCCGCGTGCTGCGCTACAGCGACTACTGG
ATCAGCCTGCGCCCCGCCTGA
Translation:
MSEKPERQRIVEEAIEWMVRLQSGDFSAAEGDALERWKALSSEHAEVFRQLLGSLAPLQDSPWRGQPSATVL
RALEQPSSRRRFVGGALGLFVLLAGGAGLERWVQAGMGLPGELATGTGERRDWLLADGSRLRLNARSKARPL
LDGAQRRLELRRGALRLEVKEDPRGAFALDCAAGRVDCASGSLLLAEERGAIRLVTLRGSARLTTGEGRQLA
VAARRSLLFDAGGLLEQGPMQAGEDAWASGWLEVHDRSLAWVAEAFRPYLPGILQLDAEIAGNRVSGLFPLD
DMHTSLDMLGRSLPIRVLRYSDYWISLRPA*
AnnotationID:2309GeneID:2301
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor protein
Cell Localization:()
Synonyms:PA2094
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04773, FecR, FecR protein.
CD-Length = 323 residues,  98.8% aligned
Score =  242 bits (619), Expect = 4e-65
Identities = 136/324 (41%), Positives = 169/324 (52%), Gaps = 18/324 (5%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues,  98.8% aligned
Score =  226 bits (578), Expect = 2e-60
Identities = 133/322 (41%), Positives = 162/322 (50%), Gaps = 9/322 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4605




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21751




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32613




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2301_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2301
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3920
                           PA2094_tr
                           translation of PA2094
                           318
                           99.37
                           99.68
                           0
                           1615.0
     

     
     
119733
                           gb|AAG05482.1|AE004637_2
                           (AE004637) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           318
                           99.37
                           99.68
                           0
                           1615.0
     

     
     
3921
                           PA2051_tr
                           translation of PA2051
                           323
                           39.62
                           57.27
                           11
                           585.0
     

     
     
119734
                           gb|AAG05439.1|AE004631_8
                           (AE004631) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           323
                           39.62
                           57.27
                           11
                           585.0
     

     






      

          
GC ORFID: 45303How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2094Glimmer Score: 

          
Start: 1622355Stop: 1623311

          
Length: 957


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2094 translation of PA2094Homolog Bit Score 626.0

          
Other Homologs:  t_PA2051 (ORF: BLASTX 230.0), t_PA2094 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGAAGCCGGAACGGCAACGCATCGTCGAGGAGGCCATCGAATGGATGGTGCGCCTGCAATCCGGC 
GACTTCAGCGCCGCCGAGGGCGATGCCCTGGAACGCTGGAAGGCGCTGTCGAGCGAGCATGCCGAGGTGTTC 
CGGCAACTGCTTGGCAGCCTCGCGCCGCTACAGGACTCGCCCTGGCGCGGCCAGCCGAGCGCTACCGTGCTG 
CGCGCCCTGGAGCAGCCGTCGAGCCGCCGGCGCTTCGTCGGCGGCGCCCTCGGGCTGTTCGTCCTGCTCGCC 
GGCGGAGCCGGCCTGGAGCGCTGGGTCCAGGCCGGCATGGGCCTGCCCGGCGAACTGGCGACCGGCACCGGC 
GAGCGCCGCGACTGGTTGCTGGCCGACGGCAGCCGCCTGCGCCTGAACGCGCGGAGCAAGGCGCGACCGCTG 
CTCGACGGCGCCCAGCGACGCCTGGAGCTGCGGCGCGGCGCGTTGCGCCTGGAAGTGAAGGAGGACCCGCGC 
GGCGCCTTCGCTCTCGACTGCGCCGCCGGACGGGTGGACTGCGCCAGCGGCAGCCTGCTGCTTGCCGAGGAG 
CGCGGGGCGATCCGCCTGGTGACCCTGCGCGGCAGCGCGCGGCTGACCACCGGCGAGGGACGCCAGCTGGCG 
GTGGCGGCACGACGCAGCCTGCTGTTCGACGCCGGCGGCCTGCTCGAACAGGGCCCGATGCAGGCCGGAGAG 
GATGCCTGGGCCAGCGGCTGGCTGGAGGTCCACGACCGTTCCCTGGCCTGGGTCGCGGAGGCCTTCCGGCCC 
TATCTGCCAGGCATCCTCCAGCTCGACGCGGAGATCGCCGGCAACCGCGTCAGCGGTCTGTTCCCGCTGGAC 
GACATGCACACGTCCCTGGACATGCTCGGGCGCAGCCTGCCGATCCGCGTGCTGCGCTACAGCGACTACTGG 
ATCAGCCTGCGCCCCGCCTGA