ViewGene
Locus Name:
GeneID:
Location:

GeneID:2300
TrivialName: PA14_47430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47430
PAO1 Ortholog Locus:PA1297
Sequence Length:951
Protein Length:316
Start: 4225704
Stop: 4226654
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04686.1|AE004559_5 (AE004559) probable metal transporter [Pseudomonas aeruginosa PAO1]
Identities = 312/326 (95%), Positives = 314/326 (96%), Gaps = 10/326 (3%)
Sequence:
ATGCCCGGCACCCCGACTACCCAGCCCCTGCGCCATTCCCATCGGTTCGACCAGGGCAACCCGCTGGCCGAG
CGCAACACGCGCTGGGCGGTATTGCTCACCGCCTGCATGATGGTCGCGGAAATCGCCGGCGGCTGGCTGTTC
AACTCCATGGCCCTGCTCGCCGACGGCTGGCACATGAGTTCCCATGCCCTGGCCCTGGGTCTTGCGATACTC
GCCTACGGCGCCGCGCGGCGCTATGCCGACGACCCGCGCTTCAGCTTCGGTACCTGGAAGATCGAGGTGCTC
GGCAGCTACACCAGCGCCCTGCTGCTTCTGCTGGTGGCCGGGCTGATGCTCTACCAATCGGTCGAACGCCTG
CTCGACCCCAGCCCGATCCACTACCAGCAGGCGATGCTGGTCGCCGCGCTCGGCCTGCTGGTCAACCTCGCC
TGTGCCTGGCTGCTGCGCGACGGCCATGTCCACCATGGGCACGGCCACTCGCACCACGACCACGACCATCAT
GCCCACCGGCACGACCTGAATCTGCGCGCCGCCTACCTGCACGTGCTGGCGGATGCCGCCACCTCGCTGCTG
GCGATCGTCGCGCTGGCCGGCGGCCTGCTGTGGAACGCGGCCTGGCTGGACCCGCTGATGGGTATCGTCGGC
GCGGTACTGGTCAGTGTCTGGGCATGCGGCCTGATCCGGCAGAGCAGCCGGGTATTGCTGGATGCGCAGATG
GATGCGCCGGTGGCTGCGGAAATCCGCGCGGCGATCGCCAGCAGCCCGCTGCCGGCGGAACTGCTCGACCTG
CACCTATGGCAGGTCGGCCAGGGCAAGTACGCCTGCCTGCTGAGTCTGCTGACCACCGAGGAAGGCAGCGCC
GACTATTTCAAGCGCCGCCTGGCCGAGCATGAGGAACTGGTGCACATCACCGTCGAGGTGAATCCGCTGCTC
CCGCTCGCTGCCTGA
Translation:
MPGTPTTQPLRHSHRFDQGNPLAERNTRWAVLLTACMMVAEIAGGWLFNSMALLADGWHMSSHALALGLAIL
AYGAARRYADDPRFSFGTWKIEVLGSYTSALLLLLVAGLMLYQSVERLLDPSPIHYQQAMLVAALGLLVNLA
CAWLLRDGHVHHGHGHSHHDHDHHAHRHDLNLRAAYLHVLADAATSLLAIVALAGGLLWNAAWLDPLMGIVG
AVLVSVWACGLIRQSSRVLLDAQMDAPVAAEIRAAIASSPLPAELLDLHLWQVGQGKYACLLSLLTTEEGSA
DYFKRRLAEHEELVHITVEVNPLLPLAA*
AnnotationID:2308GeneID:2300
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 20:08:13
Gene Name:
Confidence Code:3
GeneProduct:putative metal transporter
Cell Localization:()
Synonyms:czcD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative heavy metal transporter
Functional Category Confidence Code:5
COGs:COG1230,pfam01545
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC41703.1| (AB088420) probable metal transporter [Pseudomonas resinovorans]
          Length = 317

 Score =  448 bits (1153), Expect = e-125
 Identities = 212/299 (70%), Positives = 251/299 (83%), Gaps = 2/299 (0%)

>gb|AAM43195.1| (AE012518) heavy metal transporter [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 331

 Score =  394 bits (1012), Expect = e-109
 Identities = 200/321 (62%), Positives = 234/321 (72%), Gaps = 13/321 (4%)

>emb|CAC46575.1| (AL591789) PUTATIVE HISTIDINE-RICH TRANSPORTER TRANSMEMBRANE
           PROTEIN [Sinorhizobium meliloti]
          Length = 321

 Score =  294 bits (752), Expect = 5e-79
 Identities = 164/321 (51%), Positives = 209/321 (65%), Gaps = 12/321 (3%)






 
Structural Features:
COG1230, CzcD, Co/Zn/Cd efflux system component 
[Inorganic ion transport and metabolism]
CD-Length = 296 residues,  96.3% aligned
Score =  234 bits (599), Expect = 8e-63
Identities = 113/303 (37%), Positives = 170/303 (56%), Gaps = 22/303 (7%)

pfam01545, Cation_efflux, Cation efflux family.
CD-Length = 279 residues,  98.2% aligned
Score =  167 bits (424), Expect = 2e-42
Identities = 86/291 (29%), Positives = 136/291 (46%), Gaps = 24/291 (8%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4603




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21749




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37517




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2300_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2300
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3919
                           PA1297_tr
                           translation of PA1297
                           326
                           95.70
                           96.31
                           10
                           1620.0
     

     
     
119717
                           gb|AAG04686.1|AE004559_5
                           (AE004559) probable metal transporter [Pseudomonas aeruginosa PAO1]
                           326
                           95.70
                           96.31
                           10
                           1620.0
     

     
     
119718
                           dbj|BAC41703.1|
                           (AB088420) probable metal transporter [Pseudomonas resinovorans]
                           318
                           67.29
                           80.81
                           3
                           1147.0
     

     
     
119719
                           gb|AAM43195.1|
                           (AE012518) heavy metal transporter [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           336
                           61.01
                           71.13
                           25
                           1020.0
     

     
     
119720
                           gb|AAM38895.1|
                           (AE012054) heavy metal transporter [Xanthomonas axonopodis pv. citri str. 306]
                           340
                           59.41
                           69.70
                           24
                           1007.0
     

     






      

          
GC ORFID: 45302How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1297Glimmer Score: 

          
Start: 728205Stop: 727255

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1297 translation of PA1297Homolog Bit Score 626.0

          
Other Homologs:  t_PA1297 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGCACCCCGACTACCCAGCCCCTGCGCCATTCCCATCGGTTCGACCAGGGCAACCCGCTGGCCGAG 
CGCAACACGCGCTGGGCGGTATTGCTCACCGCCTGCATGATGGTCGCGGAAATCGCCGGCGGCTGGCTGTTC 
AACTCCATGGCCCTGCTCGCCGACGGCTGGCACATGAGTTCCCATGCCCTGGCCCTGGGTCTTGCGATACTC 
GCCTACGGCGCCGCGCGGCGCTATGCCGACGACCCGCGCTTCAGCTTCGGTACCTGGAAGATCGAGGTGCTC 
GGCAGCTACACCAGCGCCCTGCTGCTTCTGCTGGTGGCCGGGCTGATGCTCTACCAATCGGTCGAACGCCTG 
CTCGACCCCAGCCCGATCCACTACCAGCAGGCGATGCTGGTCGCCGCGCTCGGCCTGCTGGTCAACCTCGCC 
TGTGCCTGGCTGCTGCGCGACGGCCATGTCCACCATGGGCACGGCCACTCGCACCACGACCACGACCATCAT 
GCCCACCGGCACGACCTGAATCTGCGCGCCGCCTACCTGCACGTGCTGGCGGATGCCGCCACCTCGCTGCTG 
GCGATCGTCGCGCTGGCCGGCGGCCTGCTGTGGAACGCGGCCTGGCTGGACCCGCTGATGGGTATCGTCGGC 
GCGGTACTGGTCAGTGTCTGGGCATGCGGCCTGATCCGGCAGAGCAGCCGGGTATTGCTGGATGCGCAGATG 
GATGCGCCGGTGGCTGCGGAAATCCGCGCGGCGATCGCCAGCAGCCCGCTGCCGGCGGAACTGCTCGACCTG 
CACCTATGGCAGGTCGGCCAGGGCAAGTACGCCTGCCTGCTGAGTCTGCTGACCACCGAGGAAGGCAGCGCC 
GACTATTTCAAGCGCCGCCTGGCCGAGCATGAGGAACTGGTGCACATCACCGTCGAGGTGAATCCGCTGCTC 
CCGCTCGCTGCCTGA