ViewGene

Locus Name:
GeneID:
Location:

GeneID: 230

TrivialName: PA14_09680

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09680

PAO1 Ortholog Locus: PA4197

Sequence Length: 2277

Protein Length: 758

Start: 830905

Stop: 833181

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07584.1|AE004836_3 (AE004836) probable two-component sensor [Pseudomonas aeruginosa PAO1] Identities = 754/758 (99%), Positives = 755/758 (99%)

Sequence:

ATGAGTCCGCTTCCCGCTTCGCCTGCCCTCAACAGCCTCCTGCGCCTGCTGCGCGAGGGCGCGCCGCTGGTC
GAGCGGGTCGGTGCACTGCGCCGCTTGCTGCTCGAACATCCGGGCACGCGCCAGGCCTGGTACCTGGCCTGG
CAGCCGCAGGCGCAGACCTATACCCCGGTGCCGCCGTCGCCGGCGCTGCCGCCGGGCGCCGGCGAGCCGAAC
CGGGCCAGCGACCTGGCGTTGCGCGAGCGCCTGGCGCGCGACGGCCGGCTGGCGCTGGACGAATTGCGGCGT
TCCGCGTCCTGGCTCGGCGCGCGCTTGCGGCGTGCCGGCGTGGAGCATGGCATGGCCTTCGCCCTCGACCTG
CAGGCCGGCGACGAAGGCCTGCTGCTGGTGGCCAGCGATACGCCGCAGAGCGCCGCGCTGGACTGGCTCGGC
CTGCTCCTCGCACCGTTGCTCGCCGCCGCCCGTGGCGTCACCCGCGCCGCGCCGTTCCTCGCCGCCGACCCG
CAGCCGGCACTGCTGCTCGACGGCGAGGCGCAGGCAGTGGAATTCAACCAGGCTTTCCTTGCCTTGCTTGGC
GAGCGGCCGCGCGAGGCCTGGCGCGCCTTCCTCCCAGCCAACCATGGGCAACTGGTGCGCGCCAGCCTGGGG
CAGGCGCGGGCCCTCGGCGAGGTGGAGGCGGAGTGCGACGGGCGCATCCTGCTCTGGCAGTTCATTCCCGAC
AGCGCCGAGGCCCGGGTGCTGGCGCGCTGCCGCGACGCCACCGCCAGCCTGCGCGGCGAGCGCGAGGCGGCG
CGGGCCAGCCGGCTGTACCGGCTGATCACCGAGAACACCACCGACCTGATTTCCCGGCATACCCTCGACGGC
ATTTTCCTCGACGCCTCGCCGGCCTCCTGGACCCTGCTCGGCTACTGGCCGGAGGAACTGCGCGGGCGTCCG
GCGCAGGCGTTGTTCCACCCCCAGGACCGCGGCCAGGTGGCGCTGCGCGCGCGCGAAGCGCTGGAGCAGGAC
GGCTACCTGACCATCACCTACCGTATCCGCCACCGCGACGGCCGCTACCGCTGGTTCGAGACCGCCAGCCGG
GCGATCCGCGAGACCTACACCGGGGCGGTGGTGGAGGTGGTCAGCGTGTCCCGCGATGTCACCCGGCGGGTC
GAGGCGGAGGAGAACCGCCGGCGCCTGGCCGAAGTGGTCGAGGCGAACACCGACCTGGTGCTGTTCGTCGAG
CATGGCGGCCGCGTCACCTACCTCAATCCTTCGGCACGTGCCGCCCTCGGCATCGCCGACGGGCAGGAGGCG
CCGGCACTGGAACGCCTGCTGGCCGGCGACACTCCTGCGCGGTTGGCCGAAGAGGGTTGGCGACAGGCGCGC
GATGGCGGCGTTTGGAGCCGCGAGGGGCGCCTGCAACCGCAGGACGGGCGTCCGTCGCTGCCGGTCTCGCTG
GTGTTGCTGGCCCATCGCGGCCGCGGCGAGGAGCGCTATTACTCGCTGGTGGCCCGCGACATGACCGAACGC
GAACTGCGCGAGGCTCAGCAGCGCCGTCACCAGGACGAACTGGCGCACACTGCGCGGCTGGTCACTCTCGGC
GAACTGGCCTCGGGCATCGCCCACGAGATCAACCAGCCGCTGGCGGCGGTGATGAACTACGCCAGCGCCAGC
CAGCGTTACCTGGCCGTCCTCGGCAGCCAGCCCGAGGCCGCCGGGCGGGTGGCCGAGGGGCTGGCGCGGATC
GGCGAGCACGCCGGCCACGCGGCGGAGGTGATCAAGCGCCTGCGCGCCTTCCTGCGCAAGGGCCAGCGGCGC
CTGCAGGCGCTCGACCTCAACCAGGTGGCACGCGAGGCCATCGGCCTCTGCGCGTGGGAAGCCGGGCACTGG
CAAGTGGCGGTGGAAGAAGCGATGACCGACAATCCCCCGCCGCTGTATGCCGACCGCGTGCTGCTCGAACAG
GTGTTCCTCAATCTGCTGCGCAACGCCATCGAAGCCAACCGCGAGGCGCATCCCGGCTCGCCGTCGCGGGTC
GTCATCGGTAGCCGCGTCGAGCCCGGCGGGCTGCTCTGCCTGTGGGTTCGCGACCAGGGACCGGGAGTGCCG
GCGGATCAGCTGGAACACATTTTCACGCCGTTCCACACCAGCAAGCCGGAAGGGCTGGGCCTGGGCCTGTCG
ATGAGCCGCAGCATCGTCGAGGGCTTCGGCGGCACCCTCGAAGCCGAGCTGCCGGCGGATGGCGGGTTGCTC
ATGAACTGCCGGCTGCCGCTCGCCGCCGGCGCCACGGGAGGTTAA

Translation:

MSPLPASPALNSLLRLLREGAPLVERVGALRRLLLEHPGTRQAWYLAWQPQAQTYTPVPPSPALPPGAGEPN
RASDLALRERLARDGRLALDELRRSASWLGARLRRAGVEHGMAFALDLQAGDEGLLLVASDTPQSAALDWLG
LLLAPLLAAARGVTRAAPFLAADPQPALLLDGEAQAVEFNQAFLALLGERPREAWRAFLPANHGQLVRASLG
QARALGEVEAECDGRILLWQFIPDSAEARVLARCRDATASLRGEREAARASRLYRLITENTTDLISRHTLDG
IFLDASPASWTLLGYWPEELRGRPAQALFHPQDRGQVALRAREALEQDGYLTITYRIRHRDGRYRWFETASR
AIRETYTGAVVEVVSVSRDVTRRVEAEENRRRLAEVVEANTDLVLFVEHGGRVTYLNPSARAALGIADGQEA
PALERLLAGDTPARLAEEGWRQARDGGVWSREGRLQPQDGRPSLPVSLVLLAHRGRGEERYYSLVARDMTER
ELREAQQRRHQDELAHTARLVTLGELASGIAHEINQPLAAVMNYASASQRYLAVLGSQPEAAGRVAEGLARI
GEHAGHAAEVIKRLRAFLRKGQRRLQALDLNQVAREAIGLCAWEAGHWQVAVEEAMTDNPPPLYADRVLLEQ
VFLNLLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSKPEGLGLGLS
MSRSIVEGFGGTLEAELPADGGLLMNCRLPLAAGATGG*

AnnotationID:240 GeneID:230

AnnotatorUID: diggins

Modification Date/Time: 2005-04-01 05:05:11

Gene Name:

Confidence Code: 3

GeneProduct: putative two-component sensor

Cell Localization: ()

Synonyms: PA4197

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (28) Two-component regulatory systems

Alternate Gene Product Name: putative sensory box histidine kinase

Functional Category Confidence Code: 5

COGs: COG0642,COG3852,cd00075

Secondary Functional Category(ies): signal transduction mechanisms

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN69153.1|AE016549_2 (AE016787) sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 468

 Score =  287 bits (735), Expect = 2e-76
 Identities = 183/384 (47%), Positives = 231/384 (60%), Gaps = 38/384 (9%)

Structural Features:

COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  98.8% aligned
Score =  107 bits (268), Expect = 4e-24
Identities = 78/346 (22%), Positives = 111/346 (32%), Gaps = 25/346 (7%)

COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific 
[Signal transduction mechanisms]
CD-Length = 363 residues,  90.6% aligned
Score =  102 bits (255), Expect = 2e-22
Identities = 89/356 (25%), Positives = 142/356 (39%), Gaps = 42/356 (11%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score = 77.3 bits (190), Expect = 6e-15
Identities = 42/108 (38%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Genomic Context:

Comment:

ReferenceID:463

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17605

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36918

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 230_cdd.html

URL:

Homologs By Global Alignment

Gene ID:230

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

396 PA4197_tr translation of PA4197 758 99.47 99.60 0 3860.0

22722 gb|AAG07584.1|AE004836_3 (AE004836) probable two-component sensor [Pseudomonas aeruginosa PAO1] 758 99.47 99.60 0 3860.0

22723 gb|AAN69153.1|AE016549_2 (AE016787) sensory box histidine kinase [Pseudomonas putida KT2440] 759 37.94 45.58 292 1294.0

GC ORFID: `43232`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4197`	Glimmer Score:
Start: `4123032`	Stop: `4120756`
Length: `2277`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA4197 translation of PA4197`	Homolog Bit Score `1491.0`
Other Homologs: `t_PA4197 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTCCGCTTCCCGCTTCGCCTGCCCTCAACAGCCTCCTGCGCCTGCTGCGCGAGGGCGCGCCGCTGGTC GAGCGGGTCGGTGCACTGCGCCGCTTGCTGCTCGAACATCCGGGCACGCGCCAGGCCTGGTACCTGGCCTGG CAGCCGCAGGCGCAGACCTATACCCCGGTGCCGCCGTCGCCGGCGCTGCCGCCGGGCGCCGGCGAGCCGAAC CGGGCCAGCGACCTGGCGTTGCGCGAGCGCCTGGCGCGCGACGGCCGGCTGGCGCTGGACGAATTGCGGCGT TCCGCGTCCTGGCTCGGCGCGCGCTTGCGGCGTGCCGGCGTGGAGCATGGCATGGCCTTCGCCCTCGACCTG CAGGCCGGCGACGAAGGCCTGCTGCTGGTGGCCAGCGATACGCCGCAGAGCGCCGCGCTGGACTGGCTCGGC CTGCTCCTCGCACCGTTGCTCGCCGCCGCCCGTGGCGTCACCCGCGCCGCGCCGTTCCTCGCCGCCGACCCG CAGCCGGCACTGCTGCTCGACGGCGAGGCGCAGGCAGTGGAATTCAACCAGGCTTTCCTTGCCTTGCTTGGC GAGCGGCCGCGCGAGGCCTGGCGCGCCTTCCTCCCAGCCAACCATGGGCAACTGGTGCGCGCCAGCCTGGGG CAGGCGCGGGCCCTCGGCGAGGTGGAGGCGGAGTGCGACGGGCGCATCCTGCTCTGGCAGTTCATTCCCGAC AGCGCCGAGGCCCGGGTGCTGGCGCGCTGCCGCGACGCCACCGCCAGCCTGCGCGGCGAGCGCGAGGCGGCG CGGGCCAGCCGGCTGTACCGGCTGATCACCGAGAACACCACCGACCTGATTTCCCGGCATACCCTCGACGGC ATTTTCCTCGACGCCTCGCCGGCCTCCTGGACCCTGCTCGGCTACTGGCCGGAGGAACTGCGCGGGCGTCCG GCGCAGGCGTTGTTCCACCCCCAGGACCGCGGCCAGGTGGCGCTGCGCGCGCGCGAAGCGCTGGAGCAGGAC GGCTACCTGACCATCACCTACCGTATCCGCCACCGCGACGGCCGCTACCGCTGGTTCGAGACCGCCAGCCGG GCGATCCGCGAGACCTACACCGGGGCGGTGGTGGAGGTGGTCAGCGTGTCCCGCGATGTCACCCGGCGGGTC GAGGCGGAGGAGAACCGCCGGCGCCTGGCCGAAGTGGTCGAGGCGAACACCGACCTGGTGCTGTTCGTCGAG CATGGCGGCCGCGTCACCTACCTCAATCCTTCGGCACGTGCCGCCCTCGGCATCGCCGACGGGCAGGAGGCG CCGGCACTGGAACGCCTGCTGGCCGGCGACACTCCTGCGCGGTTGGCCGAAGAGGGTTGGCGACAGGCGCGC GATGGCGGCGTTTGGAGCCGCGAGGGGCGCCTGCAACCGCAGGACGGGCGTCCGTCGCTGCCGGTCTCGCTG GTGTTGCTGGCCCATCGCGGCCGCGGCGAGGAGCGCTATTACTCGCTGGTGGCCCGCGACATGACCGAACGC GAACTGCGCGAGGCTCAGCAGCGCCGTCACCAGGACGAACTGGCGCACACTGCGCGGCTGGTCACTCTCGGC GAACTGGCCTCGGGCATCGCCCACGAGATCAACCAGCCGCTGGCGGCGGTGATGAACTACGCCAGCGCCAGC CAGCGTTACCTGGCCGTCCTCGGCAGCCAGCCCGAGGCCGCCGGGCGGGTGGCCGAGGGGCTGGCGCGGATC GGCGAGCACGCCGGCCACGCGGCGGAGGTGATCAAGCGCCTGCGCGCCTTCCTGCGCAAGGGCCAGCGGCGC CTGCAGGCGCTCGACCTCAACCAGGTGGCACGCGAGGCCATCGGCCTCTGCGCGTGGGAAGCCGGGCACTGG CAAGTGGCGGTGGAAGAAGCGATGACCGACAATCCCCCGCCGCTGTATGCCGACCGCGTGCTGCTCGAACAG GTGTTCCTCAATCTGCTGCGCAACGCCATCGAAGCCAACCGCGAGGCGCATCCCGGCTCGCCGTCGCGGGTC GTCATCGGTAGCCGCGTCGAGCCCGGCGGGCTGCTCTGCCTGTGGGTTCGCGACCAGGGACCGGGAGTGCCG GCGGATCAGCTGGAACACATTTTCACGCCGTTCCACACCAGCAAGCCGGAAGGGCTGGGCCTGGGCCTGTCG ATGAGCCGCAGCATCGTCGAGGGCTTCGGCGGCACCCTCGAAGCCGAGCTGCCGGCGGATGGCGGGTTGCTC ATGAACTGCCGGCTGCCGCTCGCCGCCGGCGCCACGGGAGGTTAA