ViewGene
Locus Name:
GeneID:
Location:

GeneID:2299
TrivialName: PA14_53290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53290
PAO1 Ortholog Locus:PA0849
Sequence Length:951
Protein Length:316
Start: 4723724
Stop: 4722774
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04238.1|AE004520_1 (AE004520) thioredoxin reductase 2 [Pseudomonas aeruginosa PAO1]
Identities = 315/316 (99%), Positives = 315/316 (99%)
Sequence:
ATGCCCGATACCCTCCGCCACGCCCGAGTGATCATCCTCGGTTCCGGTCCCGCCGGTTACAGCGCGGCTGTC
TACGCCGCGCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCCGGCGGCCAGTTGACCACCACC
ACCGAGGTCGACAACTGGCCGGGCGATCCCCACGGCCTGACCGGCCCGGCACTGATGCAGCGGATGCAGGAG
CACGCCGAGCGCTTCGAGACCGAGATTGTCTTCGACCACATCCATGCCGTGGACCTGGCCGGCAAGCCGTTC
ACCCTGCGCGGCGACAACGGCACCTACACCTGCGACGCACTGATCGTCGCCACCGGTGCCAGCGCGCGCTAC
CTGGGGTTGCCGTCGGAGCAGGCGTTCATGGGCAAGGGCGTGTCGGCCTGCGCCACCTGCGACGGTTTCTTC
TACCGCAACCGCGAAGTGGCGGTGATCGGCGGCGGCAATACCGCTGTCGAAGAGGCCCTGTACCTGGCCAAC
ATCGCCAGCCGGGTGACCCTGGTGCATCGTCGCGAGACCTTCCGCGCCGAGAAGATCCTCCAGGACAAGCTG
CAGGCGCGGGTCGCCGAAGGCAAGATAGTGCTCAAGCTCAACGCCGAGGTCGATGAGGTGCTTGGCGACACG
ATGGGCGTCACCGGCGTGCGCCTGAAGAACCGCGATGGTGGCAGCGAGGAGATCGCCGTGGATGGCATGTTC
GTCGCCATCGGCCATACTCCCAATACCTCGCTGTTCGAAGGGCAACTGGCCCTGAAGGACGGCTACCTGGTG
GTCAACGGCGGGCGCGAAGGCAACGCCACCGCGACCAACGTACCGGGTGTGTTCGCCGCCGGCGACGTGGCC
GACCACGTCTACCGCCAGGCGATCACCTCGGCCGGCGCCGGCTGCATGGCCGCGCTGGATGTGGAGCGCTAT
CTCGATTCGCTCTGA
Translation:
MPDTLRHARVIILGSGPAGYSAAVYAARANLKPLLITGMQAGGQLTTTTEVDNWPGDPHGLTGPALMQRMQE
HAERFETEIVFDHIHAVDLAGKPFTLRGDNGTYTCDALIVATGASARYLGLPSEQAFMGKGVSACATCDGFF
YRNREVAVIGGGNTAVEEALYLANIASRVTLVHRRETFRAEKILQDKLQARVAEGKIVLKLNAEVDEVLGDT
MGVTGVRLKNRDGGSEEIAVDGMFVAIGHTPNTSLFEGQLALKDGYLVVNGGREGNATATNVPGVFAAGDVA
DHVYRQAITSAGAGCMAALDVERYLDSL*
AnnotationID:2307GeneID:2299
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:37
Gene Name:trxB2 
Confidence Code:2
GeneProduct:thioredoxin reductase 2
Cell Localization:(1) Cytoplasmic
Synonyms:PA0849
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0492, KOG0404, COG3634, pfam00070
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Pyrimidine metabolism
Homology:






 
Structural Features:
COG0492, TrxB, Thioredoxin reductase. Score: 351, 1e-97
KOG0404, Thioredoxin reductase. Score: 330, 3e-91
COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit. Score: 202, 1e-52
pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase






   
Genomic Context:






   
Comment:


















    ReferenceID:4601




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21747




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2299
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3917
                           PA0849_tr
                           translation of PA0849
                           316
                           99.68
                           99.68
                           0
                           1615.0
     

     
     
119582
                           gb|AAG04238.1|AE004520_1
                           (AE004520) thioredoxin reductase 2 [Pseudomonas aeruginosa PAO1]
                           316
                           99.68
                           99.68
                           0
                           1615.0
     

     
     
119583
                           gb|AAO54705.1|
                           (AE016860) thioredoxin reductase [Pseudomonas syringae pv. tomato str. DC3000]
                           321
                           87.85
                           94.39
                           6
                           1467.0
     

     
     
119584
                           gb|AAN66411.1|AE016268_10
                           (AE016776) thioredoxin reductase [Pseudomonas putida KT2440]
                           321
                           87.85
                           92.21
                           6
                           1464.0
     

     
     
119585
                           dbj|BAB64360.1|
                           (AB053183) GlcNA-DH alpha subunit [Pseudomonas fluorescens]
                           337
                           73.59
                           81.30
                           32
                           1262.0
     

     






      

          
GC ORFID: 45301How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0849Glimmer Score: 

          
Start: 230183Stop: 231133

          
Length: 951


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0849 translation of PA0849Homolog Bit Score 626.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4346 (ORF: BLASTX 565.0), t_PA2616 (ORF: BLASTX 473.0), t_PA0849 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGATACCCTCCGCCACGCCCGAGTGATCATCCTCGGTTCCGGTCCCGCCGGTTACAGCGCGGCTGTC 
TACGCCGCGCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCCGGCGGCCAGTTGACCACCACC 
ACCGAGGTCGACAACTGGCCGGGCGATCCCCACGGCCTGACCGGCCCGGCACTGATGCAGCGGATGCAGGAG 
CACGCCGAGCGCTTCGAGACCGAGATTGTCTTCGACCACATCCATGCCGTGGACCTGGCCGGCAAGCCGTTC 
ACCCTGCGCGGCGACAACGGCACCTACACCTGCGACGCACTGATCGTCGCCACCGGTGCCAGCGCGCGCTAC 
CTGGGGTTGCCGTCGGAGCAGGCGTTCATGGGCAAGGGCGTGTCGGCCTGCGCCACCTGCGACGGTTTCTTC 
TACCGCAACCGCGAAGTGGCGGTGATCGGCGGCGGCAATACCGCTGTCGAAGAGGCCCTGTACCTGGCCAAC 
ATCGCCAGCCGGGTGACCCTGGTGCATCGTCGCGAGACCTTCCGCGCCGAGAAGATCCTCCAGGACAAGCTG 
CAGGCGCGGGTCGCCGAAGGCAAGATAGTGCTCAAGCTCAACGCCGAGGTCGATGAGGTGCTTGGCGACACG 
ATGGGCGTCACCGGCGTGCGCCTGAAGAACCGCGATGGTGGCAGCGAGGAGATCGCCGTGGATGGCATGTTC 
GTCGCCATCGGCCATACTCCCAATACCTCGCTGTTCGAAGGGCAACTGGCCCTGAAGGACGGCTACCTGGTG 
GTCAACGGCGGGCGCGAAGGCAACGCCACCGCGACCAACGTACCGGGTGTGTTCGCCGCCGGCGACGTGGCC 
GACCACGTCTACCGCCAGGCGATCACCTCGGCCGGCGCCGGCTGCATGGCCGCGCTGGATGTGGAGCGCTAT 
CTCGATTCGCTCTGA